Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02220 ATGTTTGGTCAGTGTCGCAGGGCACTGCTCTGCAACCTAAACCCTAAACTAAACCCCTTCACTTGTCTTCAATCCTTCACTTCCTCTGCGCAACAAGAAGCACACTCCTTCACCTACGCCTACCTCCTCAACAACTGCGGCTTCCCACCCAAGACAGCCTCCCACCTCTCCACCCGCCTCCGCCTCTCCTCCTCCGCCACCCCCGACGGCGTCCTCGCCCTCTTCCGCTCCCACGGCCTCTCCGCCGCCGAAATCCGGCGCATCGTCGAGACCTACCCGAACCTCCTCCTCCACAAAAGCCTCCAGCCGAAATTCAGCTTCCTCCGGTCGAAGGGCGCCACGGACTCGGACCTGGTCCTGATCATCACCAAAAACCCTAGAATCCTCCACTTCTCCCTCCCCCCCCGCTACCACCTCATCCACCGCTTCACCCTCTCCGACTCCTCCACCCTCTGCGCCATCAAGTCCTGCCCCAGCATCCTCTACTCCAACAATCCCTCTCGCAACATCGACACCCTCCTCCGCCACAATGTCCCCCATTCCAAAATCTCCATGCTCCTCCGCTACTGGGCCTCCTCCCTCGTCGCCGCCCACCCCTCCTTCCACGCCGCCGTCCTCCAAGTCCTCAATCTCGGCTTCAACCCCAACCAAACTCTCTTCCTCGTCGCTCTCCGCGCCAAGCTCGTCAGAAAATCCCTCTGGGATAGCAAAATTCAGCTCTACAAGAAATGGGGTTGGTCTGAGGAGATTGTGCTGTCCACTTTCTTGAGGAACCCGTGGTGCATGCTCGCTTCCGAGGCCAAGATCGAGGCCATGATGGGGTTTTGCGTCAGGGAATTGGGCTGGGACTCGTTGCTTCTGGCCAAGCATTCCGTGCTCATTGCGCTCAGTTTGGAGAAGAGGGTTGTTCCCAGGGCTTCTGTGTTGAGGTTTCTTCTGTCCAAAAGGTTGCTTAAGGATGTTAATTGGGCTGCTGCGTTTATCGCTTCTGAAGATGTCTTCTTGAAGAAGTTTGTGCTTTGCTTTCACAAGGATGCGTCTCAGCTGTTGAAGCTCTATCAAGAGAAAAGAGATGCTCCCAGATAG 1086 0.5663 MFGQCRRALLCNLNPKLNPFTCLQSFTSSAQQEAHSFTYAYLLNNCGFPPKTASHLSTRLRLSSSATPDGVLALFRSHGLSAAEIRRIVETYPNLLLHKSLQPKFSFLRSKGATDSDLVLIITKNPRILHFSLPPRYHLIHRFTLSDSSTLCAIKSCPSILYSNNPSRNIDTLLRHNVPHSKISMLLRYWASSLVAAHPSFHAAVLQVLNLGFNPNQTLFLVALRAKLVRKSLWDSKIQLYKKWGWSEEIVLSTFLRNPWCMLASEAKIEAMMGFCVRELGWDSLLLAKHSVLIALSLEKRVVPRASVLRFLLSKRLLKDVNWAAAFIASEDVFLKKFVLCFHKDASQLLKLYQEKRDAPR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02220 361 SMART mt_12 119 146 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 SMART mt_12 284 318 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 SMART mt_12 86 114 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 Gene3D Transcription termination factor 3, mitochondrial 132 351 IPR038538 -
Cca08g02220 361 Pfam mTERF 72 275 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 PANTHER CGI-12 PROTEIN-RELATED 20 358 IPR003690 GO:0003690|GO:0006355
Cca08g02220 361 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 20 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02220 Cca-Chr8 55628269 55630261 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g02220 mTERF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02220 K15032 - gmx:102663105 445.277