Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02215 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTGAAGGTGAAGGTGAAGGAGGTTCCCAACAAGGACTCTTCTTTTAAAGAAGCAGCTTCTGTTCTTCCTCAGTCTCATCATTCAGATAAATCAAAATCATCACGAAGTGGCTCAGATACTAAGAAGGAACCACCAGTGCCGAAGGATGGCCCAACAGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGTTTTGGACGTGTATACAAAGGTCGCCTTGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGTCTTCAAGGAAATCGAGAGTTTTTAGTGGAAGTTCTCATGCTCAGTCTCTTGCATCATCCCAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGTTGCTTGTTTATGAATTTATGCCATTGGGATCTCTGGAGGACCATTTACACGATCTTCCTCCTGATAAGGAACCTTTGGACTGGAACACTAGGATGAAAATAGCAGCTGGAGCAGCAAAGGGGTTGGAATATTTGCATGACAAGGCAAATCCCCCGGTTATATATAGAGACTTAAAATCATCCAACATCCTTCTCGACGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCAGTTGGTGACAAGACTCATGTATCCACACGAGTAATGGGGACATATGGCTATTGTGCCCCAGAATATGCTATGACTGGGCAACTAACTCTGAAATCAGATGTCTACAGTTTCGGAGTTGTCTTCCTTGAACTCATTACTGGGCGTAAGGCTATTGACAATACACGTGCACATGGAGAGCACAATCTTGTTGCATGGGCACGGCCTCTCTTCAAAGACCGGCGAAAGTTCCCCAAAATGGCCGACCCACTACTTCAAGGCCGTTACCCAATGCGAGGACTGTACCAAGCACTTGCAGTTGCTGCAATGTGCCTACAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAGACATATGATCCAAATGCAGCCAATCAATCCAACAGGGTTGGCCCATCAACCCCCAGGGTCAGGGATGACAGAAGGAGCATGGCAGATGGTGTTGACAGCCCTGACCGAGGCCGGCTTGGCTCCCCTTCCACCCACAGAAACTCGCCTGACTTCAGGAAGAGAGACAGCAGGGATCCGAGTGCTCTAACCGACTTGGCAAGGAGTGAGACCGGCGGTGGATCAGGGAGGAAATGGGGATTGGATGATTCTGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTAAATACTGCAAGAGCAAGAGAGAGTCCTTGGAACCGCGACCTGGACCGAGAGCGTGCAGTGGCAGAAGCCAAAGTGTGGGGAGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGAAGCTTCGATGCCACGAATGACTGA 1542 0.4831 MGGCFPCFGSSNKEDSGGVRVKVKVKEVPNKDSSFKEAASVLPQSHHSDKSKSSRSGSDTKKEPPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRVRDDRRSMADGVDSPDRGRLGSPSTHRNSPDFRKRDSRDPSALTDLARSETGGGSGRKWGLDDSERQESQRDSPVNTARARESPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATND 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02215 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cca08g02215 513 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Cca08g02215 513 MobiDBLite consensus disorder prediction 389 404 - -
Cca08g02215 513 PANTHER OS07G0668900 PROTEIN 1 507 - -
Cca08g02215 513 MobiDBLite consensus disorder prediction 419 434 - -
Cca08g02215 513 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02215 513 MobiDBLite consensus disorder prediction 48 68 - -
Cca08g02215 513 Gene3D Phosphorylase Kinase; domain 1 66 168 - -
Cca08g02215 513 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02215 513 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 507 - -
Cca08g02215 513 MobiDBLite consensus disorder prediction 33 73 - -
Cca08g02215 513 Gene3D Transferase(Phosphotransferase) domain 1 169 386 - -
Cca08g02215 513 MobiDBLite consensus disorder prediction 376 483 - -
Cca08g02215 513 CDD STKc_IRAK 98 367 - -
Cca08g02215 513 Pfam Protein kinase domain 97 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02215 513 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02215 Cca-Chr8 55547631 55556612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02215 4 371 Glycoside Hydrolase AT3G07070 65.041 9.07e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca08g02215 Pkinase 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02215 - - gmx:100783535 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02215 08 55547631 55556612 Cca08g02215 08 55547631 55556612 ECH
Cca11g02806 11 55497837 55499503 Cca08g02215 08 55547631 55556612 PCT