Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02214 ATGGCGAGGCCTTCCAAGCCTCACTCGTCTTCCGACGAGGCACTCTCCAACGCTTCCAGTTCCTCCgaggaagaagagcaggtgaaccagcagcagatcaacgaggaggaggacgaggaggagctcgaggcggtggCGCGCTCCGCCAGTTCcgacgacgacgatgacgaggtcgccgccgacaattcgccggattccgatgaagatcccgccgccgccgaggacgccgaagacgaTCAGGGTGGGGATAATGTTGATCCCGAAATTAGCAAGCGAGAGAAGGCTAGGTTGAAAGAAATGCAAAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATGCACAAAATGCGGCCATTGACGCTGACATGAACAATAGAGGAAAAGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTTCTCATTTTGCGAAAGGGGATCAATCTTCGTCTCAGAAGAAGTCAAAGGGAAGGGGTCGCCATGCATCAAAAGTGACCgaggaagaggaagatgaagaatacttgaaggaagaagaagaTGGTGTAGCAAACACACGTCTGGTGACACAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTAGCTGGACTAAATTGGCTCATACGCTTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCTTTACTGGGTTACTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGACTGCGTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTTTCCAAAACAATGAGGCTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCACGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCCGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGTCCATTTCTTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAATATTATAGAGCACTACTTCAGAAGGATCTAGAGGTTGTAAATGCTGGTGGTGAAAGGAAGCGCCTCTTGAACATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTTCTAGACATACTTGAAGATTATTTAATGTTTCGAGGATATCAATACTGTCGCATTGATGGGAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAGCCAGGAAGTGAGAAATTTGTCTTCCTGTTGTCAACTCGAGCTGGTGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGATTGGAACCCGCAAGTGGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAagttttccgtttttgtactgagTATACAATTGAAGAGAAAGTCATTGAAAGGGCCTATAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAGGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATCATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAAAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAAAAGGATGAGAACAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAATTTTTCAACACACAAAGGTTGAGTGAGCTGTACGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCTGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAGAAAGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGTAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAAGAAAGATATAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAAGCTAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAGCTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACTACTCAGGAACTGGCAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAGGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCTTTGTCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGATGATTATGCAAGCACGGGGAAGAGGAGAAAATAA 3225 0.391 MARPSKPHSSSDEALSNASSSSEEEEQVNQQQINEEEDEEELEAVARSASSDDDDDEVAADNSPDSDEDPAAAEDAEDDQGGDNVDPEISKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIRDELLVAGKFDVCVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALSRQTESPSSLKKRKQLTMDDYASTGKRRK 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02214 1074 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1074 - -
Cca08g02214 1074 Coils Coil 21 41 - -
Cca08g02214 1074 SUPERFAMILY Homeodomain-like 905 1027 IPR009057 -
Cca08g02214 1074 Pfam Helicase conserved C-terminal domain 502 614 IPR001650 -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 29 43 - -
Cca08g02214 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 376 IPR014001 -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 1052 1074 - -
Cca08g02214 1074 Gene3D - 938 1041 - -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 1 102 - -
Cca08g02214 1074 Pfam SLIDE 907 1017 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cca08g02214 1074 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1074 - -
Cca08g02214 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 655 IPR001650 -
Cca08g02214 1074 CDD SANT 853 897 IPR001005 -
Cca08g02214 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 414 IPR027417 -
Cca08g02214 1074 CDD SF2_C_SNF 500 625 - -
Cca08g02214 1074 SMART helicmild6 530 614 IPR001650 -
Cca08g02214 1074 Coils Coil 1007 1034 - -
Cca08g02214 1074 Coils Coil 90 117 - -
Cca08g02214 1074 Pfam SNF2-related domain 212 479 IPR000330 GO:0005524|GO:0140658
Cca08g02214 1074 ProSiteProfiles SANT domain profile. 849 901 IPR017884 -
Cca08g02214 1074 Gene3D ISWI, HAND domain 751 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cca08g02214 1074 SMART sant 952 1013 IPR001005 -
Cca08g02214 1074 SMART sant 850 899 IPR001005 -
Cca08g02214 1074 Pfam HAND 763 845 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cca08g02214 1074 MobiDBLite consensus disorder prediction 9 28 - -
Cca08g02214 1074 SMART ultradead3 195 387 IPR014001 -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 145 179 - -
Cca08g02214 1074 Gene3D iswi atpase 905 937 - -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 1022 1038 - -
Cca08g02214 1074 Gene3D - 850 904 - -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 1022 1074 - -
Cca08g02214 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 697 IPR027417 -
Cca08g02214 1074 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 762 852 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cca08g02214 1074 MobiDBLite consensus disorder prediction 54 83 - -
Cca08g02214 1074 Gene3D - 200 415 IPR038718 -
Cca08g02214 1074 Gene3D - 420 712 IPR027417 -
Cca08g02214 1074 SUPERFAMILY Homeodomain-like 853 903 IPR009057 -
Cca08g02214 1074 MobiDBLite consensus disorder prediction 84 102 - -
Cca08g02214 1074 CDD DEXHc_SMARCA1_SMARCA5 196 416 IPR044754 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02214 Cca-Chr8 55535248 55544455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02214 220 641 RAD5 or RAD16-like Gene Family AT1G02670 26.931 7.70e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca08g02214 SNF2_N 2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02214 K11654 - gmx:100809750 1951.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02214 08 55535248 55544455 Cca08g02214 08 55535248 55544455 ECH
Cca11g02807 11 55500582 55508942 Cca08g02214 08 55535248 55544455 PCT