Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02207 ATGGGGTGTGTGTTTGGGAGAGAGTCTTCAGGGGAGGAAGTTAGGGAGGCAAAATCAGAGGTGGGTAGAGGAGAGGTTGTTGTTGAGAATGAGAACATTGAGAAGAAGGAGAAGAGGACAAGGGCAAGGGGGGAGAGGAGGCGATCCTCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCATGGTGAGCAGGTAGCAGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGTGAAGCTATCAATGGATTGACCCCTAGGAGGGCTGACACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTCTGACGGGGAAAATCGTTGCTCTAAAGAAGGTTCGTTTTGACAATTTAGAGCCAGAGAGCGTGAAGTTCATGGCCAGAGAAATTTTGATTCTGCGTCGCCTGGATCACCCCAATGTTGTCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCGTGCAGTTTATATCTTGTATTTGAGTACATGGTGCATGATCTGGCTGGACTTGCCACAAACCCGACAATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGACTGGAACATTGTCACAATCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAATCTACTTATTGATAATGATGGAATTCTTAAAATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACACCCTATGACCAGTAGAGTGGTTACATTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATAGTGTGGGAGTGGACCTTTGGAGTGCTGGCTGCATTCTTGCAGAGTTATTGGCTGGAAAGCCAATCATGCCTGGTCGAACAGAGGTGGAGCAGCTACACAAGATATTTAAGCTTTGTGGCTCTCCTTCTGACGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCACAACAGTCATACAGGCGATGCATTGCAGAGACATTTCAAGATTTTCCTCCATCTTCCCTGCCACTCATTGAGACCCTTCTTGCAATTGATCCTGATGAACGTTTGACTGCCACTGCTGCATTGCATAGTGAATTCTTTACAACAAAACCATATGCATGTGAGCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGCTACCGGTGTCAAGAAATCGCGTCCACGCGAGCGAGTTGGGAGGGGCATTCCAGTTCCAGAGGCCAATGCTGAGCTGCAAGCAAATATTGATAGACGTCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTCTCACAGCCTAAAGCAAATTTCCAAACCTGGTCTGGCCCATTGGTAGATCCTGCTGCGGTGAGTGCGCCAAGGAGAAAGAAGAAACCTGGCAAGTGA 1602 0.4632 MGCVFGRESSGEEVREAKSEVGRGEVVVENENIEKKEKRTRARGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPTIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYRRCIAETFQDFPPSSLPLIETLLAIDPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANATGVKKSRPRERVGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANFQTWSGPLVDPAAVSAPRRKKKPGK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02207 533 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02207 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cca08g02207 533 Gene3D Transferase(Phosphotransferase) domain 1 178 418 - -
Cca08g02207 533 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02207 533 PANTHER CYCLIN-DEPENDENT KINASE 20 532 - -
Cca08g02207 533 Gene3D Phosphorylase Kinase; domain 1 83 177 - -
Cca08g02207 533 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Cca08g02207 533 MobiDBLite consensus disorder prediction 496 511 - -
Cca08g02207 533 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02207 533 CDD STKc_CDK9_like 95 379 - -
Cca08g02207 533 PANTHER CELL DIVISION PROTEIN KINASE 20 532 - -
Cca08g02207 533 MobiDBLite consensus disorder prediction 460 533 - -
Cca08g02207 533 MobiDBLite consensus disorder prediction 415 434 - -
Cca08g02207 533 MobiDBLite consensus disorder prediction 9 40 - -
Cca08g02207 533 SUPERFAMILY Protein kinase-like (PK-like) 90 384 IPR011009 -
Cca08g02207 533 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02207 Cca-Chr8 55477264 55483649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02207 90 417 Core Cell Cycle Gene Families AT5G10270 50.872 1.78e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca08g02207 Pkinase 4.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02207 K08819 - gmx:100814934 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02207 08 55477264 55483649 Cca08g02207 08 55477264 55483649 ECH
Cca11g02815 11 55564673 55569005 Cca08g02207 08 55477264 55483649 PCT