Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02204 ATGGGTATAATCAGAAGCATGAGATCGAGGTCGCATCGTGCGGTGCAGGACCAAGGAGAGTGTGTCGGCGACAGCATGCGACAGAGTTGTTGGGCCAACATGCCGCAGGAGCTTCTCCGGGAAGTCCTCCTCCGCATCGAGGCCTCCGAGGACGCCTGGCCGCCGCGGAAGCGCGTCGCATCGTGCGGTGCAGGACCAAGGAGAGTCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCGCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCAAATGCTTTATAAAGCGCAACAGGTCCACCCAAACGTATTATTTGTATCTCAGTTTAACTAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCAGACGATATGTCAAAGGGAAGCAACACCTATGTTGGGAAGCTAAGATCAAATTTTCTTGGAACAAAGTTCACTATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTATGAAAAGCCGCTCCACAAGACTGGTGAATCTTAAACAAGTTTCACCTAAGGTCCCTACTGGGAACTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCAAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCGCAGCAATTGAACCTGGGGGTGCAGCTCCTACACAGACCGAGTTCTCTCTGAACAACATAGATATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCATGTCTGGACCCCTGGCTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCTCCCAGCTGGTGGCTTCCGCTGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTTCAGTTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGACTACCGGTACCCTATTTCAGCATTCCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCCTGTGAATGACATGTTTAAACAGCTTGAATCGAGATTATATAGCTATCTCTTGCTGCTGGGAGAAGTATGGTTTGACTTGAATGTTAATTGTTGGGAAGCTGACCCATGA 1179 0.4775 MGIIRSMRSRSHRAVQDQGECVGDSMRQSCWANMPQELLREVLLRIEASEDAWPPRKRVASCGAGPRRVWRQITKDIVKTPELSAKITFPISVKQPGPRENLLKCFIKRNRSTQTYYLYLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGAAPTQTEFSLNNIDMFPSFPFFRSKSNRVENSMSGPLADQKDGMLVLKNKAPSWWLPLKMDLLDQNMIRLSFSLEKLGRICLQWTTGTLFQHSRHLQSASAALIPRLPVNDMFKQLESRLYSYLLLLGEVWFDLNVNCWEADP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02204 392 PANTHER TUBBY-RELATED 6 312 - -
Cca08g02204 392 Gene3D Tubby Protein; Chain A 92 313 IPR025659 -
Cca08g02204 392 SUPERFAMILY Tubby C-terminal domain-like 81 305 IPR025659 -
Cca08g02204 392 PRINTS Tubby superfamily signature 163 187 IPR000007 -
Cca08g02204 392 PRINTS Tubby superfamily signature 147 163 IPR000007 -
Cca08g02204 392 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Cca08g02204 392 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Cca08g02204 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 6 312 - -
Cca08g02204 392 Pfam Tub family 93 304 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02204 Cca-Chr8 55441565 55457363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02204 8 315 TUB Transcription Factor Family AT2G47900 66.881 4.73e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca08g02204 Tub 1.6e-62 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02204 08 55441565 55457363 Cca08g02204 08 55441565 55457363 ECH
Cca11g02817 11 55574092 55576086 Cca08g02204 08 55441565 55457363 PCT