Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02201 ATGAACCAATACCACATCTACGAAGCCATCGGTCGCGGCAAACACTCCACCGTTTACAAAGGCAGGAAGAAGAAGACTATCGAGTATTTCGCCATCAAAAGCGTCGATAAATTACAGAAGACTAAGGTCCTTGAAGAGGTCAGGATTCTTCACACATTGGATCATGTAAATGTGCTCAAGTTTCATGAATGGTATGAAACTTCTGCTCACCTATGGTTGGTTTTGGAGTACTGTGTTGGAGGGGATCTGCTTTCCATATTACAACAGGATAGTCAACTTCCCGAAGACTCGGTTCATGATCTTGCTTATGATCTAGTCAAAGCTTTGCAATTTTTACATTCAAATGGAATAATTTATTGTGACCTGAAACCATCAAATATCCTGTTAGATGAAAATGGATGTGCAAAGCTATGTGATTTTGGATTGGCTAGGAAATTGAAAGATATATCAAAAGCTCCTTCTCCCTTGTTGTCATCGCGAGCAAAACGTGGAACGCCCTATTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTAGGCTGTGTACTATATGAATGTTATACTGGGAAGCCTCCCTTTGTGGCAAGAGAATTAACTCAGCTTGTAAAATCAATCATTTCTGATCCGACTCCACCTCTCCCTGGTAATCCAAGTCGACCTTTTGTGAATTTAATTAATTCCCTGTTGGTAAAAGATCCAGCTGAAAGAATACATTGGCCTGAGCTTTGTGGACATGCCTTTTGGAGAACCAAATTTACTCTGGTGCCTCTGCCTGCTCAACCTGCATTTGATGATATGATAGGGCTACATGCCAAACCATGCTTATCAGAACGTAATGGAGATAAAGCTTTGCATAACAGGACCCCTCCTAAATATCGTGAAAAAGATGTCAAAGGGGTGTTGAAGAAGGATGAAAATTCTGTTTTAGGATCCAGAGGCATTGAGACACCAACAAGGGCAACACCAAATGGCCACAGAACTCAGACAAAGGGTTCTGGCAGAACACTTGACGTAAAGCAGAAAGATCCTTCCAATATTAGCAAGGGTGTGAATCTTTTAAGACTGTCAAGGATAGCAAAATCAAATTTACAGAAAGAAAACGAGAAGGAAAACTATCGACGCCCCTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAACGAGAATACTGAAGATGATGCGCATGAAGACTCTGATGGCGCTGAACAAACAACTCCTGTGCCCAGTGAGAAAATGGACAATCATTTCCTTAATCAGGGAAAAGTGGAGGAGATTGAAAATAATACACACCAGTTGGACACCCCATCTGTTGTTAACACTCCAGCCTCAGATGATCCCAGGTCATTTGATCATGAATCAGCTCCTGACTGTCCTGACATATCCGCTATTTCTCCCAGCGTGAGTCCTCAGGTAAAGAAACATAGAGGAGTTAAAGAAGACTCAGGATCTGGCCTTGAATCTGATTCTTCAAGGTTGTCTAACAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCGGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTTAGAAGTCATTCCTTCTCTCCCTTTTGAGGCATTGCAAGCATCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCTCAACCGAATATTAGCCATTTTGAATGGAAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTTGAGATGTTAAGCAGTAATGCTGACGCAGCTAATATCTTGACCAATGGGCCAATAATGCTCATGCTTGTAAAATTGCTGCGTCAATCCAAGGCATCTGCTTTGCGTGTTCAACTTGCTTCACTGATCGGTCTGTTGATTAGGCACTCTACTTTTGTTGATGATAGTTTGGCTAATTCTGGAATTTTAGGTGCGCTGACTGATGGTCTTAGAGATAGGCAGGAAAAGGTGAGGAGATTCTCCATGGCTGCTTTGGGTGAGTTACTATTTTATATATCCACTCAAAATGCGGATGGCAAGGATAACAGTCAACTTGAATCTCCATCAAAGGACAATAGGACTACGTATGGCTGGCAGGTTCCAAATTCATTAATATCATTTGTGTCATCAATATTGAGAAAGGGTGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTAGGGCGTTTGACCAGTCAAGATGTTATTAGTAATCTCTGCTATATCTATAGAGCGGCAGGGAAACAAGAGAGTATGAGGCTCACTGCAGGATCATGTTTGGTGCGCTTAGTCCGTTTTAATCCTCCTAGCATTCAGTCGGTTATAGAGAAACTCTCATTCAAGGATCTAGCTTCTGCTCTTGTCAAGGGCAGTCCACGAGAGCAACAAATCAGCTTAAATCTTCTTAACATGGCAATCCTTGGaaacacgttcacaaatattggaagatatcttctaccactcgctgaggataaaaatctgatcccaagtcttttggctcttgtcgagcaaggtactgaagttttaagaggaaaggcactagtccttgtggctctcctgtgtaaacatggcaggaggtggcttccacactttttttgtagccaaaagttactttctgtggtagacaggctgggaaaagagaaggatgcctatgtgaggcaatgtttggatgcatttgtgcctattgtggcatccagtattcctggcttactggatataataacaggggatgtccagcaaatgatgggagcaaggcgccacggacacatctctgcccttgccagcagatctgcttcaaaaaccaacatccatttgtttcccgttgtccttcatcttcttggaagttcaacatttaagcacaaagtcgtgacaccacaagtcttacggcagttagcgaatctaatcaaactcgtggagacaccgtttcagGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTGTGATTCTTGGCAATCCTGACATTTTCATACGTGAAATCCTCCCGAGTTTGACAGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGATTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATTGTACTTTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGAAGGATCTGAAATTCATATCAAATACCCGTTTTCTTCCTCTCTACCCGACCTTGATTGAAGATGAAGATCCTATTCCTATCTATGCACAGAAGCTTCTTGTCATGCTACTGGAGTTCAGTTTCATCACAATTCCGGACATTCTTCATCTGAAGACAATTTCACAATGCTTTGAGTTCTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTTAAGCTGTGTCTTGCTCTGGCTTCAGCTCCTGAGATGGAGTCCAAAATACTCTCTCATTTGAAAGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTATATGCAAAGGGTATGGACGATTTGCTGGAACCAACTCTTGGGCTGTGTAGGGCTTTTCTAGCACGTTCAGTCAGCTGTACCAAAGGCTTCAGCTACACAACAGAACCAACTCTCTTAGGTAAGTGTCCTCCCGAGTTGAGTGGTGGTGCTATTGATCCCCAACAATGCATAAAAGATATAGCAGACTTTGGAAGCAATGTTAGTATTTTGCTTGAGTTGAGTGCCTCCACAGAAACCACCATTGCTGATATGGCTTCTGAATGTGTCGTATTACTGCTCAAGGCAGCACCTAGAGAAGCCACCACTGGTATACTAACCAATCTCCCCAAGGTCACTGTGATCCTAGAGACCTGGAATAGAGGCATTCCTCACTTGATGGTGCAGCGAATGCTTCATGCTTTAGGTTATGCTTGCAAACAATACTTGCTGCATGCAATGATATTATCAATATCCATACCAGAGATTTCAAGAATTGAAGTCATAGTTTCTGAACTCAAAAGTTCAGGTGTACCAGCTTTAGCCAAAACAGCTGGGCTGGCAGCCATGGAATTGCAGCGGCTTCCTCGCTGCATTTGA 4119 0.3685 MNQYHIYEAIGRGKHSTVYKGRKKKTIEYFAIKSVDKLQKTKVLEEVRILHTLDHVNVLKFHEWYETSAHLWLVLEYCVGGDLLSILQQDSQLPEDSVHDLAYDLVKALQFLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKAPSPLLSSRAKRGTPYYMAPELFEDGGVHSYASDFWALGCVLYECYTGKPPFVARELTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIHWPELCGHAFWRTKFTLVPLPAQPAFDDMIGLHAKPCLSERNGDKALHNRTPPKYREKDVKGVLKKDENSVLGSRGIETPTRATPNGHRTQTKGSGRTLDVKQKDPSNISKGVNLLRLSRIAKSNLQKENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDAHEDSDGAEQTTPVPSEKMDNHFLNQGKVEEIENNTHQLDTPSVVNTPASDDPRSFDHESAPDCPDISAISPSVSPQVKKHRGVKEDSGSGLESDSSRLSNNLSQVLWHPSDLSVRPVMPSRKVDKVLEVIPSLPFEALQASDFVKMPKEQLEAVLNRILAILNGNTSIGEKQNVIRYLEMLSSNADAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADGKDNSQLESPSKDNRTTYGWQVPNSLISFVSSILRKGEDDITQLYALRTIENICSQGGFWVGRLTSQDVISNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNMAILGNTFTNIGRYLLPLAEDKNLIPSLLALVEQGTEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVPIVASSIPGLLDIITGDVQQMMGARRHGHISALASRSASKTNIHLFPVVLHLLGSSTFKHKVVTPQVLRQLANLIKLVETPFQGRDDFQITLLRIFESLTEESPVILGNPDIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIVLLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKILSHLKVVRRIGNFLEFVYAKGMDDLLEPTLGLCRAFLARSVSCTKGFSYTTEPTLLGKCPPELSGGAIDPQQCIKDIADFGSNVSILLELSASTETTIADMASECVVLLLKAAPREATTGILTNLPKVTVILETWNRGIPHLMVQRMLHALGYACKQYLLHAMILSISIPEISRIEVIVSELKSSGVPALAKTAGLAAMELQRLPRCI 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02201 1372 MobiDBLite consensus disorder prediction 371 398 - -
Cca08g02201 1372 MobiDBLite consensus disorder prediction 411 434 - -
Cca08g02201 1372 MobiDBLite consensus disorder prediction 319 359 - -
Cca08g02201 1372 Gene3D Transferase(Phosphotransferase) domain 1 1 282 - -
Cca08g02201 1372 MobiDBLite consensus disorder prediction 371 386 - -
Cca08g02201 1372 MobiDBLite consensus disorder prediction 448 513 - -
Cca08g02201 1372 Gene3D - 711 915 IPR011989 -
Cca08g02201 1372 Gene3D - 566 696 IPR011989 -
Cca08g02201 1372 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1369 IPR044591 GO:0000911|GO:0000914|GO:0008017
Cca08g02201 1372 SUPERFAMILY ARM repeat 557 1142 IPR016024 -
Cca08g02201 1372 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02201 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Cca08g02201 1372 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02201 1372 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Cca08g02201 1372 MobiDBLite consensus disorder prediction 321 359 - -
Cca08g02201 1372 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02201 1372 MobiDBLite consensus disorder prediction 448 464 - -
Cca08g02201 1372 CDD STKc_ULK4 3 258 - -
Cca08g02201 1372 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02201 Cca-Chr8 55378336 55385363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02201 1 247 AGC Kinase Gene Family AT1G45160 35.145 6.03e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Cca08g02201 Pkinase 2.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02201 K17545 - gmx:100777288 2479.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02201 08 55378336 55385363 Cca08g02201 08 55378336 55385363 ECH