Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02200 ATGTACCAAAATGCCCCTAGATTGAAAAGGTTTGCAGTTTACTCCTCTTTTTGGTGCGGCATCTCTCGCCTCTCAACTCCCAATTACTCAGCCAGGATCAATCTGAATGTGCGGACTGTTTTGAAATCTGGATTTTTGATGGAGTGCAATAAAGAAGAGGCTTTAAGGGCTAAGGAAATTGCTGAAAAGAAAATGGAAAGCAAGGATTTCAATGGGGCAAGAAAATTTGCCCTTAAGGCTCAGCAGCTATATCCTGATTTGGAGAATATCACTCGAATGCTTATTGTTTGTGATGTGCATTGCTCCGCTGAGCACAAATTGTTTGGTAATGAAATGAACTGGTATAAAATTCTTCAAATTGAGCAGACGGCTAATGATACAACAATTAAGAAGCAATACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTTCTTTTGGATAGAGAAAAACGATCTCGGCTTGACATGAGTTTGCACAGGTTTCCAATGAACAGAACCACTATGCCATCTCATCATCAGCAGAATGTTCAGATGAAATTTAATCCTGTGATGCAAACCAGTATCAGGCCCAATTTTACAAACTTCAATCCTCCACAGCAACAGCAGTCTAGGCAGCCATCTAAGCAGGGGCCTAATGGTGTCCGCCCTACTTTTTGGACTGTGTGCTCATTTTGCTCTGTTAGATACGAGTATTATAGGGAAGTTTTAAACAGATCTCTTCGCTGTCAGAATTGCAATAGGCCATTCATTGCATATGATGTGGATATACAAGGTACAACACCAGCAACTAATACAAGTCAGCAAGCTTTTGCTGCACAGAACTATAGTCAGAATCATGGTGCTTTCAAGGTTGGTGTTGGATCTCAAGGTAATTTGCATGCCCGCAGGTCCAATACAGAACCACATCAGAAAAAAGGTCCTACTGCTGATGTCTCTGTAAAGACAAATGAAAAAAAGAGGAAAAGGCGGGCATCAGAATCCAGTGAAAGTTCCGAATCTATAGGCAGCACTGATTCTGAATCTGAAGAGGATATACTCTATGAGAAAGATGTTTCTCCCAGTGTTTCTACTCATAGAGAAGGGAATCCACGTAGATCTACTCGACAAAAGCATAAGGTTTCCTACAGGGAGAATGTGAGTGACGATGATGAAGGAAGTGGATCTCCATCTGGTGCAGGTGAAAATGGGGAGGCAGCTAAAATGAATGATCAGTATGGTTTGGCTGCTGATCTGAAAGATGATCAACAAGGGGTAAAGCAGAAGCAAAACTCTTGTTCTGATGAGAGCTTACAAAATACAAAGGAGGAAATTGTGGAGGTGAGAGGGAAAGAAGCAGTGGGCAGCTCAAAGATAGATAAAGGTTCAGAGCAGTCGACCTCGGAACCAACAAATCAACCAGATAGTTTTGTTTATCCAGATGCAGAGTTCAGTGACTTTGACAAGGACAAGACAGAGGGGTCTTTTGCTGCTGGGCAGATTTGGGCTATTTATGATACTATCGATGGTATGCCTAGATTCTATGCTTTAATCAGAAAAGTCCTCACTCCTGGATTCAAATTGCGGATAACGTGGTTTGAACCAGATCCAGATGGGAAAGATGAATTTCAGTGGTTCCATGAGCAATTGCCAATTGCTTGTGGGAAATATAAACTAGGTATAACTGAATTCACTGAAGATCATTTGATGTTCTCTCATCTGATTTTTTGTGAAAAGATTGACCGCCGCACATATAAATTATATCCTAGAAAGGGTGAAACTTGGGCTATTTTTAAAAATTGGGATATCAAATGGCATATAGATGCAAAATCTCATCGGCAGTATGATTTTGAATTTGTTGAAGTCTTATCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGTCTCTTCTCTCAAATTGAGGGATATAAACGTACATTTCAAATTCCATCAGCTGAGTTATTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCCGTAGGATCTTATGAACTTGATCCTGTATCATTGCCATTGAATATCGAAGAGATTGATGTTCCTGAAGATTTAGAAGTAATGGCTGGTTGTTTTCCATCTACTGGGACGAGCACAAGGTCTTCAGATATGTCAAAATTCAAGAACTCCGAGGGATGTACATCTACTGCAAAGGTTAATTTGAAAAGAAGCAATTCAGAAGAGGAGAACAAGGATCCCATTGATCATAATGGTAATGATAGTAGTGCTCCATCAGCTTCAGCCGAAGATGATGCTTTTGAAATTCCCGACCCTGTGTTCTGCAATTTTGATGCTGAGAGGTCTCTTGAAAAGTTTCAGATCGGTCAGATTTGGGCATTTTACTGTGACGAGGATGGACTGCCAAAGTACTATGGTCAGATTAAGCAGGTGCACACTGTAACTGATGGTAAGAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAATTTGGGCATTGTATAGGAACTGGACGGCCAAAATAAAACGTTCTGATTTGGATAACTGGCGGTATGACATAGTGGAAGTTATTGGAGAAAATGATTTGTGGATGGATGTTCTACCCTTGGAGTTGGTAAGTGGTTACCATTCAGTTTTTAAGGGTAAATCAAATGAAGGATCACCTAGGACCATGCGAATATTGTGGAAAGAGTTGCTTAGGTTCTCTCACCAAATCCCTGCCTTCAAACTGTCAGAAGAACATGGTGGCAATCTGAAAGGCTTCTGGGAACTTGATCCGGGAGCACTACCCCTTCATTATTTTTCCAACAAATAA 2880 0.4073 MYQNAPRLKRFAVYSSFWCGISRLSTPNYSARINLNVRTVLKSGFLMECNKEEALRAKEIAEKKMESKDFNGARKFALKAQQLYPDLENITRMLIVCDVHCSAEHKLFGNEMNWYKILQIEQTANDTTIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSRLDMSLHRFPMNRTTMPSHHQQNVQMKFNPVMQTSIRPNFTNFNPPQQQQSRQPSKQGPNGVRPTFWTVCSFCSVRYEYYREVLNRSLRCQNCNRPFIAYDVDIQGTTPATNTSQQAFAAQNYSQNHGAFKVGVGSQGNLHARRSNTEPHQKKGPTADVSVKTNEKKRKRRASESSESSESIGSTDSESEEDILYEKDVSPSVSTHREGNPRRSTRQKHKVSYRENVSDDDEGSGSPSGAGENGEAAKMNDQYGLAADLKDDQQGVKQKQNSCSDESLQNTKEEIVEVRGKEAVGSSKIDKGSEQSTSEPTNQPDSFVYPDAEFSDFDKDKTEGSFAAGQIWAIYDTIDGMPRFYALIRKVLTPGFKLRITWFEPDPDGKDEFQWFHEQLPIACGKYKLGITEFTEDHLMFSHLIFCEKIDRRTYKLYPRKGETWAIFKNWDIKWHIDAKSHRQYDFEFVEVLSDYVEGVGVVVAYLAKLKGFVSLFSQIEGYKRTFQIPSAELFRFSHRVPSFKMTGQERVGVPVGSYELDPVSLPLNIEEIDVPEDLEVMAGCFPSTGTSTRSSDMSKFKNSEGCTSTAKVNLKRSNSEEENKDPIDHNGNDSSAPSASAEDDAFEIPDPVFCNFDAERSLEKFQIGQIWAFYCDEDGLPKYYGQIKQVHTVTDGKKKEYEIFPRKGEIWALYRNWTAKIKRSDLDNWRYDIVEVIGENDLWMDVLPLELVSGYHSVFKGKSNEGSPRTMRILWKELLRFSHQIPAFKLSEEHGGNLKGFWELDPGALPLHYFSNK 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02200 959 MobiDBLite consensus disorder prediction 757 771 - -
Cca08g02200 959 Pfam Domain of unknown function (DUF3444) 832 935 IPR024593 -
Cca08g02200 959 Pfam Domain of unknown function (DUF3444) 486 691 IPR024593 -
Cca08g02200 959 Pfam Domain of unknown function (DUF3444) 786 833 IPR024593 -
Cca08g02200 959 SMART dnaj_3 112 169 IPR001623 -
Cca08g02200 959 MobiDBLite consensus disorder prediction 470 486 - -
Cca08g02200 959 PANTHER - 831 957 - -
Cca08g02200 959 MobiDBLite consensus disorder prediction 207 231 - -
Cca08g02200 959 ProSiteProfiles dnaJ domain profile. 113 177 IPR001623 -
Cca08g02200 959 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 47 834 - -
Cca08g02200 959 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 831 957 - -
Cca08g02200 959 Gene3D DnaJ domain 110 224 IPR036869 -
Cca08g02200 959 PANTHER - 47 834 - -
Cca08g02200 959 PRINTS DnaJ domain signature 115 133 IPR001623 -
Cca08g02200 959 PRINTS DnaJ domain signature 149 169 IPR001623 -
Cca08g02200 959 PRINTS DnaJ domain signature 133 148 IPR001623 -
Cca08g02200 959 SUPERFAMILY Chaperone J-domain 110 194 IPR036869 -
Cca08g02200 959 MobiDBLite consensus disorder prediction 432 494 - -
Cca08g02200 959 MobiDBLite consensus disorder prediction 451 469 - -
Cca08g02200 959 MobiDBLite consensus disorder prediction 753 784 - -
Cca08g02200 959 MobiDBLite consensus disorder prediction 330 347 - -
Cca08g02200 959 Pfam DnaJ domain 113 174 IPR001623 -
Cca08g02200 959 CDD DnaJ 113 166 IPR001623 -
Cca08g02200 959 MobiDBLite consensus disorder prediction 300 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02200 Cca-Chr8 55352429 55357602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02200 50 273 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.193 5.05e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02200 - - gmx:100817232 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02200 08 55352429 55357602 Cca08g02200 08 55352429 55357602 ECH
Cca11g02822 11 55647784 55651350 Cca08g02200 08 55352429 55357602 PCT