Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02193 ATGCAAGCAGCTCAAGCTTCAGCCACTGATGCAGCCCCCGAGATTTCCCATCAGGCTGTCCCCCTGCAAAACAAAGAAATTTCAGACAGTGGACCCGCCGGTAGGCACCCTGATATTTCACTTCAAGTTCCCCCTAGACCTATAGGATTTGGAAGCACTAGTGGTGGAAGGGTTCTAGATCATTCTCAAAGTTTCACCAAAGGGATTTCATCATCAAGAGACTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGTAATGTAGCAGATGGCGAAAGAAGTTGCCTCCTTAATTCAGACCCCAAGTCAGCTGAAGACGGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGGTGTACTTCTCTTCCCGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCTCATAAAGATGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGCACCGAACATGAGCAACAAGATGCAAACGATGATCAAATAACTCCTGCGCCAGTAGAAGTTACTTCTGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTGAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTGGGCAAGAGGTTCAGAATTTGCCTGTAACTTTGCTTCGTGTGACCAGCTCTGTTCAACGACAAAACAGACAGCAAGGTCAGCAGAACGTACATCCAGAGTCAATAAGCGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTACTTTTTCTTCCTTGAGCAGCTACTGCTTCCTGAGTTGAAGACTCAAGCGATTATTATAGCAGCGCCATTTGCCTTTACCTTGGGCCTCCTGGCTTCTATTTTTGCAGTCATCCTGGCAATAAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCCTTTGTGGCTTTAGACGTGCATGTATTTTATACTATGTTGCATTTGACGGCCGTATATGCAATACTACTTTCATCAGTTTTTGGTTTTGGAGTTGCAATGGGCATCAATTACGCGTATATCCAGTATGCCACTTGGAGACTCCAGGTCTTTCATGATGATAACCCAGGGCAATGGGGAGAAGCCTTAGAGGCCTACAACGAAAACCCGGGTGTATTGGAGGCTAAGATCACAGAAGCAGAAGACACGGTGTTACACATTGCTGTGTACTTGGGGCAAACGTGCTTTGTGACCAATCTGCTTGATAAGATCCACGAAGAGGTGTCTCTTAACATCTTATACATGCAAAACTCGAAGGGTAACACTCCCCTTCACCTTGCAGCAGAGCTTGGGAACGTGGAACTGTGCCATGACATTGCCAAAAGGGATCCAAACCTCATTTGTGGTCGCAACTTGGAAGGTGAGTCCCCTCTCTTCTTGGCAGCTGTTCATGGCAACAGAGATGCCTTCTTTTGTCTCCATCGCCACCAACAAGGACATGCTGAGGACGACTCGCTGGCTAGGAAAAGCAATGGTGACACCATCCTTCATTCTACCATCGCCACTGAATTCTTTGGTTTAGCACTTCAAATAATAGAGTTGTACCCAAACCTGGTGAATTCTGCAAACCAGGACGGATTGACACCTCTTCATATTCTTGCTGGGAAGCCTAACTGTTTCAAAAGCAGTACAAGGATGGAGTTGCTTCAGCGTATTGTATACACTTGTTCGTTTGTTGATGAATTTGAGGAAACAGATGATGGACGTTATGACAAAGCAGAGACAACTGAGCACTGTCCAGCGAACTACGCAACATGCGCAACCTTCATATCATTGTTTAAGAGTATTGCAATAGGAAATGGGAAAAATGATGCAAGGAATGACGAAGAGAATAATGTCTCGCCAAACTATGAGCAAGAGCATGCAAAGAAAGCAAGGAAAGAAAAGAAACAGCCCGTGATCCCTCCCAATTGGGCAGCCACGATCCGATTCCTGATCCATATGATGAAGATCTTGCTTGTCATTTGTGGTGTTGGAGCATCTTGGATAGGGAAAATCCAAAGAAAGAAGGTGAAACACGTTCTGGCTAAGCAAGTGATGAATGAGCTAATTCAGCGTACTTCTTCTGTGAACAAGTATGATTATACAAATAAGAGAAAAGGAAGCATAAACAGTAGTAATGATAAGGAGAAAGGGGGCATTGAGAACAATAGAAGAAGAAGAATGTCACCTATTTTAATTGCAGCAAAGATGGGAGTGACCGAAATGGTTGAGAAGATCCTTGAGACAAACCCTGTGGCCATCCAAGACGTGGACTCTGATAACAAGAATGTTGTTCTTTTGGCCATAGAGAATAGACAGCCTAATGTTTACAGCTTGTTAAATAAAAAGAGTTTTATCAAGGATAGTGCATTTCGCCAAGTGGATAACCAAGGTAACAGTGCATTGCACCTTGCTGCCACCTATAGGAATCATAAGCCTTGGCGTGTACCTGGTGCTGCCATGCAAATGCAGTGGGAATACAAGTGGTATAAG 2667 0.4368 MQAAQASATDAAPEISHQAVPLQNKEISDSGPAGRHPDISLQVPPRPIGFGSTSGGRVLDHSQSFTKGISSSRDFLRALSFKRKGNVADGERSCLLNSDPKSAEDGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRTEHEQQDANDDQITPAPVEVTSDEEIPEEEAVCRICFDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGDKKCDVCGQEVQNLPVTLLRVTSSVQRQNRQQGQQNVHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFAFVALDVHVFYTMLHLTAVYAILLSSVFGFGVAMGINYAYIQYATWRLQVFHDDNPGQWGEALEAYNENPGVLEAKITEAEDTVLHIAVYLGQTCFVTNLLDKIHEEVSLNILYMQNSKGNTPLHLAAELGNVELCHDIAKRDPNLICGRNLEGESPLFLAAVHGNRDAFFCLHRHQQGHAEDDSLARKSNGDTILHSTIATEFFGLALQIIELYPNLVNSANQDGLTPLHILAGKPNCFKSSTRMELLQRIVYTCSFVDEFEETDDGRYDKAETTEHCPANYATCATFISLFKSIAIGNGKNDARNDEENNVSPNYEQEHAKKARKEKKQPVIPPNWAATIRFLIHMMKILLVICGVGASWIGKIQRKKVKHVLAKQVMNELIQRTSSVNKYDYTNKRKGSINSSNDKEKGGIENNRRRRMSPILIAAKMGVTEMVEKILETNPVAIQDVDSDNKNVVLLAIENRQPNVYSLLNKKSFIKDSAFRQVDNQGNSALHLAATYRNHKPWRVPGAAMQMQWEYKWYK 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02193 889 PANTHER OS02G0165000 PROTEIN 1 420 - -
Cca08g02193 889 MobiDBLite consensus disorder prediction 1 62 - -
Cca08g02193 889 MobiDBLite consensus disorder prediction 760 781 - -
Cca08g02193 889 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Cca08g02193 889 Gene3D - 438 614 IPR036770 -
Cca08g02193 889 SMART ANK_2a 517 546 IPR002110 GO:0005515
Cca08g02193 889 SMART ANK_2a 444 474 IPR002110 GO:0005515
Cca08g02193 889 SMART ANK_2a 784 814 IPR002110 GO:0005515
Cca08g02193 889 SMART ANK_2a 483 512 IPR002110 GO:0005515
Cca08g02193 889 SMART ANK_2a 555 584 IPR002110 GO:0005515
Cca08g02193 889 SMART ANK_2a 589 625 IPR002110 GO:0005515
Cca08g02193 889 MobiDBLite consensus disorder prediction 668 694 - -
Cca08g02193 889 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Cca08g02193 889 ProSiteProfiles Ankyrin repeat region circular profile. 483 499 - -
Cca08g02193 889 PANTHER ZINC FINGER PROTEIN 1 420 - -
Cca08g02193 889 SUPERFAMILY Ankyrin repeat 440 870 IPR036770 -
Cca08g02193 889 MobiDBLite consensus disorder prediction 767 781 - -
Cca08g02193 889 SMART ringv_2 213 261 IPR011016 GO:0008270
Cca08g02193 889 SUPERFAMILY RING/U-box 210 264 - -
Cca08g02193 889 Pfam Ankyrin repeat 484 510 IPR002110 GO:0005515
Cca08g02193 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 268 IPR013083 -
Cca08g02193 889 ProSiteProfiles Ankyrin repeat profile. 483 499 IPR002110 GO:0005515
Cca08g02193 889 CDD RING_CH-C4HC3_MARCH 214 261 - -
Cca08g02193 889 Gene3D - 746 873 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02193 Cca-Chr8 55244610 55256449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02193 152 316 C3H Transcription Factor Family AT2G37950 27.374 3.90e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02193 - - gmx:100527094 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02193 08 55244610 55256449 Cca08g02193 08 55244610 55256449 ECH