Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02190 ATGGACGACGCTGAAGACCCTTCCTCTCTCTGGGACTTCTCCTACCTCCTCGACTTCAACCTAGACGAAAACGACAACTCGCTCTCTCTCCCCTTACCCGACCCTCCCCCCGAGATCCCCAACGACAACAAGGTCCGAAAGCGCGACCCCAGACTCACCTGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCCAAGCTCGACGACGTCGGTTTGCCCGCCAAGAAGCGCCCCCGCGCCTCCGCCTCCGCCTCCGCCCGCTGCCAGGTCCCCGCCTGCCAGGCCGACATCTCCCAACTCAAAGGCTACCACCGCCGCCACAGAGTCTGCCTCCTCTGCGCCAATGCCGCCACCGTCCTCCTCCACGGCGAGGCCAAGAGATACTGCCAGCAGTGCGGAAAGTTTCACGTTTTATCGGATTTCGACGAGGGTAAACGCAGCTGCAGAAGGAAATTGGAGCGCCATAACACCAGAAGGCGAAGGAAGCCTCCAGCAGATTCCAGTGGTGATGCGCTTAACGAAGCTGAGCCTGCTAGTGCTAATCAAAACGAAGAAAACAATTGTGATGTCGATGCACAAAAAGATGGTTCAAATTTGAGTGCCGAGGTCAATGAAAAAGGAGTGTCTCCAGATCCTGAAGATGATGAGCCAGTACCCATTCCGGGCTCGGCTCCTGATGCCCAAAATATTAACAATGATACTGTTGTGTCCTTGGCTGTTTCTGGTGATACGCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAAGAGTGCCTATTCATCCATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTTTAGAGTTGGAGGGATATATCCGTCCTGGTTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGTGGATAAATTTATTTAGAGACTCTTTGGACTATGTGCATGATCTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAGAGTTGAGGTAAGCATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCCATGGAGTTTGTTGTTTGTGGAAGTAACTTACTGCAACCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTAAAATGTGAGTATTGTGTACCGTCTCCACATAACTGGACTGAAGAAAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACTGAGAAAAGTTTCTTAGGGCCTGCATTTATTGAGGTGGAGAATGAATCGGGTTTATCAAATTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAAAAATTAGATGTATCTCTCCTTTCGAAAGAATTCCGATCAGCATCTGGTTATTCTATCTGTAGCTCATGTGAAACTTTCGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTAAAGGACACTATTTCAGAAAATTTTGACAGGGTGATGACAGCTTCACAAATTAATAGATATTGTCATTTGTTGGATTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATAATATTGTGATTAATAGGACGAGTGATGTTGACATGACACAACTCCTGAATCACATACATAATGCTAGAAATGCCATATATCAGAAACATCAGAAAGGTGGAGGTATAATTGTGCACTCTGAAATGGAAGGCTATCAACTTGTTCAGGGATGCTCCCAAGATAACAATCTATCAGTTGCAGTTAACAGTCAGGGTATCCTGTCGAGAGCAGATGCAAAGTGGGGAGTATTAAAAAGTCCAACTTCCAATGACAAAAATGAAAGAATACCCCTTTTAAAAAGGGATATTATAATGAATGTGGAAGAGTTGCCTGGAAGATATGGGCGCCGATGTTTGGGCAGGGGATTCTTGATCTCTCGACCAGCTATTTTTGTGATTGTTTCTGTTGCTGTTTGTCTCGGGGTATGTGTGGCTGTCCTTCATCCTGGGAGGATTAGTGAGTTAGCTGTATCCGTCAGAAGGTGCTTGTTTAACTATTAG 2271 0.45 MDDAEDPSSLWDFSYLLDFNLDENDNSLSLPLPDPPPEIPNDNKVRKRDPRLTCSNFLAGRVPCACPELDAKLDDVGLPAKKRPRASASASARCQVPACQADISQLKGYHRRHRVCLLCANAATVLLHGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSSGDALNEAEPASANQNEENNCDVDAQKDGSNLSAEVNEKGVSPDPEDDEPVPIPGSAPDAQNINNDTVVSLAVSGDTRVNSGNTSNSPSYCDKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTVFIAMPNIMWINLFRDSLDYVHDLVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTRVEVSMQAPRLHYVHPTYFEAGKPMEFVVCGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEKSFLGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLLSKEFRSASGYSICSSCETFALSHTSSSDLLVDIAWLLKDTISENFDRVMTASQINRYCHLLDFLICNDSTIILGKILPNLIILTESMKSNNIVINRTSDVDMTQLLNHIHNARNAIYQKHQKGGGIIVHSEMEGYQLVQGCSQDNNLSVAVNSQGILSRADAKWGVLKSPTSNDKNERIPLLKRDIIMNVEELPGRYGRRCLGRGFLISRPAIFVIVSVAVCLGVCVAVLHPGRISELAVSVRRCLFNY 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02190 756 Pfam SBP domain 94 168 IPR004333 GO:0003677
Cca08g02190 756 MobiDBLite consensus disorder prediction 158 237 - -
Cca08g02190 756 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Cca08g02190 756 MobiDBLite consensus disorder prediction 180 210 - -
Cca08g02190 756 SUPERFAMILY SBT domain 92 170 IPR036893 GO:0003677|GO:0005634
Cca08g02190 756 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Cca08g02190 756 MobiDBLite consensus disorder prediction 26 46 - -
Cca08g02190 756 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 754 IPR044817 GO:0003677
Cca08g02190 756 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 5 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02190 Cca-Chr8 55176240 55184069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02190 8 750 SBP-box Gene Family AT5G18830 47.240 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca08g02190 SBP 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02190 - - gmx:100819905 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02190 08 55176240 55184069 Cca08g02190 08 55176240 55184069 ECH