Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02184 ATGAACGAAGAACGAGAACCACAAGCTTCCTCCAGCAATGGCGTCCACAAGGTAGAAAAAAAACAAATAGTTGATAGGGATAAATCGATTTTTAGAGGCAGACGTCCACGACCTGGTTTTTCTGATTCATTTTCAAGCATTGAGTTGGAAACTTTAGACATTGACGAGGTAGGCCCCTACCGTGATCAGTCTCCTAGAAGTCATGGATCTGAAACCCCATGTTCCAGGGCAAGTACTTCTGATTCTGAGGGTCAGGGATCAGTAGTAGGCAATTCACCAGGTAACAATAACCAGTGGCGTGGTTTCTTTAAACTTCTGAAGAAAGGATCCCAAATGCCTTTCCAAAATTTTCAACCACGGTTAAATGTTCCAAGACTCACAAGAAGAAAAAGCAAGAGGATCAGGGAGGACCTCATTCCATCTCTGAATTCTCCAGCTCTTCAGTCATCTCTTGACACTGATTTTGGCTGCTTCAAATCTTCTTGGAAAAACTTCACTCTCACAGAGCTCCTCTCAGCAACCAATGACTTTAGCTATGATAATTTGATTGGAGAGGGAGGATATGCTGAGGTTTACTTAGGCAAATTGGAGGATGGAAACTTCGTTGCCATTAAACGTTTGACAAGAGGGAATCCAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCACCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCCATACTTTATGGACCTAGAGAGAAACTGGATTGGAACCTCAGATATAGGATTGCTTTGGGGACTGCAGAGGGCCTTCGCTATCTGCATGAGGGATGTCAAAGAAGGATCATTCACAAAGATATCAAGGCTTCTAATATTCTGCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGACTAGCAAAGTGGTTACCTGACCAATGGACTCACCATACCGTCTCCAAAGTGGAAGGCACATTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTATGCCTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTTATGTGGGCAAAACCTTTGCTATCTGCAAACAAAATCAAAGAGCTTGTGGATCCAGTTTTGGATGGTGCTTATGATGAAGAGCAGATGAAACTTGTAGCCTTAACGGCTTCTCTGTGTGTAGACCAGTGTTCAATACAACGACCGGATATGAGCGAGGTGTTAGACATACTAAAAGGGGAAGCAGAGAGCTTAAGAGTGATGAAAGAACGATCGAAGTCAAAACTTCAGAGGACATATTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACAAAGCTTTTGAGTGAAAGGGAGCGACACATGGAGACTATTCTAGGCTCCTGTAATTCTAGTACAGATGGAGAAAGAAACTAG 1512 0.4259 MNEEREPQASSSNGVHKVEKKQIVDRDKSIFRGRRPRPGFSDSFSSIELETLDIDEVGPYRDQSPRSHGSETPCSRASTSDSEGQGSVVGNSPGNNNQWRGFFKLLKKGSQMPFQNFQPRLNVPRLTRRKSKRIREDLIPSLNSPALQSSLDTDFGCFKSSWKNFTLTELLSATNDFSYDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNPEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLDWNLRYRIALGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANKIKELVDPVLDGAYDEEQMKLVALTASLCVDQCSIQRPDMSEVLDILKGEAESLRVMKERSKSKLQRTYSEELLDAEEYNSTKLLSERERHMETILGSCNSSTDGERN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02184 503 Gene3D Transferase(Phosphotransferase) domain 1 254 469 - -
Cca08g02184 503 MobiDBLite consensus disorder prediction 1 95 - -
Cca08g02184 503 Gene3D Phosphorylase Kinase; domain 1 150 251 - -
Cca08g02184 503 MobiDBLite consensus disorder prediction 1 17 - -
Cca08g02184 503 PANTHER OS08G0249100 PROTEIN 37 480 - -
Cca08g02184 503 SUPERFAMILY Protein kinase-like (PK-like) 162 460 IPR011009 -
Cca08g02184 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Cca08g02184 503 ProSitePatterns Protein kinases ATP-binding region signature. 183 205 IPR017441 GO:0005524
Cca08g02184 503 SMART serkin_6 177 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02184 503 MobiDBLite consensus disorder prediction 65 95 - -
Cca08g02184 503 ProSiteProfiles Protein kinase domain profile. 177 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02184 503 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 37 480 - -
Cca08g02184 503 MobiDBLite consensus disorder prediction 18 35 - -
Cca08g02184 503 Pfam Protein tyrosine and serine/threonine kinase 180 386 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02184 Cca-Chr8 55093125 55096703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02184 131 476 Receptor kinase-like Gene Family AT4G02010 38.692 7.56e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca08g02184 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02184 - - gmx:102670300 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02184 08 55093125 55096703 Cca08g02184 08 55093125 55096703 ECH
Cca08g02184 08 55093125 55096703 Cca03g02980 03 51250573 51254441 ECH
Cca08g02184 08 55093125 55096703 Cca02g01516 02 33751042 33754372 ECH
Cca08g02184 08 55093125 55096703 Cca02g01175 02 29298369 29302130 ECH
Cca08g02184 08 55093125 55096703 Cca03g02071 03 40975849 40979703 ECH