Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02175 ATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGTTACCCTACACCGTCAGTGGGTGGGTCTAGAGACTACGGAGAACTTGGTCCTTACTCTGCCCAAAGGAAGCACATTCTCACCCAGAGTTCATTGCAATTTGTTCCTGTCCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGGGGTTACTATCCTGATTCACCCGATAAGGAAAACCAAGACAGTTTCTGCATTAGGACACAGTTTCAAGGTAGTCCAAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGGGAATTTGGCACCCAGTGTTCCAACTACGTTAAGGATAGGTTGTTGGAAAATTTGTCAAGTGACTTTGCATTGTTGGAGGACCCTGTTAAGGCCTACACTTCAGCATTCTTGACAACAAATAATGAATTGCATCAGAATGAGATTGATGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTGGTTATTGGGGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCAGTGCTGGCTGTTAAAGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCTCTGATCAGACACCATTTAGGAAAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCGAGGGTGTTGAGTTCTGACCAGGTTGAAGGGCATAAGGATCCGGATATTCAGAATTGGGGTGATGAAGAGAGTCACGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTTCCTGGGGCTGCTTTTACAAGGAGTGTAGGGGATGAGTTGGCTGAGACTATTGGTGTCATTGCCGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGACGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGTCGGGTACATCTGGACTTGGATCAGGTGAGATAAATGTCAGTGCTGTAACGCGGACCAAGAGCAAGAGGGTGAAGGGAGCATCTGAGATATCTGCTACTACTGGGTTAGATGTTTATCGTTCTGTCAGGAATGGTTTCTCTGATTTGCAGTCATGTCCACAGCATGTGGTCTCAACTAAAAGCCCAGCCATAGTTGTCCCCTCTCCAGCATGTCAAACACCGATTGCATTGTGA 1152 0.4661 MGCVHGKCCSRYPTPSVGGSRDYGELGPYSAQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGSPSVHFFGVYDGHGEFGTQCSNYVKDRLLENLSSDFALLEDPVKAYTSAFLTTNNELHQNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRKDEYERVKLCGARVLSSDQVEGHKDPDIQNWGDEESHGDDPPRLWVQNGMVPGAAFTRSVGDELAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMSGTSGLGSGEINVSAVTRTKSKRVKGASEISATTGLDVYRSVRNGFSDLQSCPQHVVSTKSPAIVVPSPACQTPIAL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02175 383 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 314 - -
Cca08g02175 383 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cca08g02175 383 CDD PP2Cc 71 306 IPR001932 -
Cca08g02175 383 Gene3D - 47 344 IPR036457 -
Cca08g02175 383 ProSiteProfiles PPM-type phosphatase domain profile. 55 383 IPR001932 -
Cca08g02175 383 MobiDBLite consensus disorder prediction 220 240 - -
Cca08g02175 383 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 314 - -
Cca08g02175 383 SUPERFAMILY PP2C-like 44 307 IPR036457 -
Cca08g02175 383 SMART PP2C_4 51 324 IPR001932 -
Cca08g02175 383 Pfam Protein phosphatase 2C 73 306 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02175 Cca-Chr8 55005830 55009774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02175 1 308 PP2C-type Phosphatase Gene Family AT3G06270 70.740 2.52e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02175 - - gmx:100777670 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02175 08 55005830 55009774 Cca08g02175 08 55005830 55009774 ECH
Cca11g02843 11 55796739 55799045 Cca08g02175 08 55005830 55009774 PCT