Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02168 ATGATTGTAAAGGAGCATTCTGTTGGTACTGAACTGGCAATGAATAATGCTAGTGTGGAGGACGAAATAGATTTTTCTTGTGAGCCATACCTAGggttagaatttgatgcagcagatgatgcacttaagttttatacttcatatgcaaatcgaatgggattcaaagttcggattggtcagctatatcgatcaagaactgatgggtcggtttcttctcgaagatttgtgtgctcaaaggagggACATCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTACAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCATAAGGACCATAATCACAATCTTGATATCAGTGGTGAAAATTGTACTCCAACAGTGCAACAAAAGGGTGGTGCAGCTATCAACTCTATTACTGAGTTTCCTCGCAGGCCAAGGAAGAAATTGCTCGAAGAAGCCAATGATGAATCCTCCTGTCCCTTTGGCATTATTGATTTCAAGCGTATGAGAAAGGAAGACCTTGAAGGGCAGTCCAGGACTGAACCTTATGTGGGTCAGGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATAATGCATATGCAGCACATTTTGGATTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTTGATCACATCCCGTAGATTTGTTTGCTCTAAAGAGGGGTTCCAACACCCTTCAAGAGTTGGTTGTGGAGCTTATTTAAGGATTAAGAGACAGCCATCAGGAAAGTGGATAGTGGACCGCCTCCGGAAAGATCATAACCATGATCTGGACTCTGAAAAGGAGGGCAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGACAGAAGAGGTAGATACGGGATTGGTAAATGGTGACCTATTTAGAATAGATAACTACCCTGCCCCTAGAGGAGGAAGGCAAAATCACATTAGAAGTGAGTGGTACAGCAtgcttttagagtattttcaatcgaggcaagcagaagatactggattcttttttgctgtggaagttgacaacggtaattgcatgagcatattttgggcggatggcagatctagatattcatgtagtcagtttggtgatgtccttgtcttagatacatcataccgaaaaactgtctatttggtaccatttgctacttttgttggagtcaaccatcacaagcaacctgtgcttcttggatgtgctctaattgctgaagaatctgaagaatctttcacttggttgtttcagacatggcttcgggcaatgtctggccgacagcctctgacagttattgccgatcaagacattgcaatccagagggcaatagcaaaagtctttcctgtaacccattatcgcttttcattgtggcaattaagggcaaaggaacaagagaacatgggtctgatgggtgatgactttacaaaagattacgaaaaatgtgtttaccagagtcagacaattgatgaatttgaagccacttggaatgtcctactcaataaatatgaattgaaggataatgcttggctaaaagaaatgtacgagaagcgtccatcttgggttccattatatttaaagagcacattttgtgctggcattcccatgaatgaaagccttgattcattctttggtgcacttttaaatgcccagacacctctcgtggagttcattcctcggtatgaaagaggtctcgagcgacgccgtgaggaagaaagaaaagaggattttaatacttctaattttcaacccatgttgcaaacaaaagaaccagtagaagaacaatgtagaaggctttacactcttactgtattcaaggtattccaaaaagagctattgcagtgctatagctatcttgggtttaaaatatttgaggaaggaggcctgagcagatatttggtgcgtaggtgtggaaatgatacggagaagcatgtagttacatgcaatgcatcaaatctcagcattaattgtagctgtcagatgtttgaatatgaaggtgttctttgtagacacgttttgagggttttccagatattgcaattaagagaagttcctcctcgttacatcttacaccgatggacaagaaatgccgaggatggggttttTCCTGACATAGAATCATGGAGCAGCTCTCAGGAACTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACTGCTTCTAAATACATAGATGCTGGTGCAACATCGATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.1827 MIVKEHSVGTELAMNNASVEDEIDFSCEPYLGLEFDAADDALKFYTSYANRMGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLDISGENCTPTVQQKGGAAINSITEFPRRPRKKLLEEANDESSCPFGIIDFKRMRKEDLEGQSRTEPYVGQEFSSPNEAYQFYNAYAAHFGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSEKEGRAKSLPASNILTEEVDTGLVNGDLFRIDNYPAPRGGRQNHIRSEWYSMLLEYFQSRQAEDTGFFFAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIAEESEESFTWLFQTWLRAMSGRQPLTVIADQDIAIQRAIAKVFPVTHYRFSLWQLRAKEQENMGLMGDDFTKDYEKCVYQSQTIDEFEATWNVLLNKYELKDNAWLKEMYEKRPSWVPLYLKSTFCAGIPMNESLDSFFGALLNAQTPLVEFIPRYERGLERRREEERKEDFNTSNFQPMLQTKEPVEEQCRRLYTLTVFKVFQKELLQCYSYLGFKIFEEGGLSRYLVRRCGNDTEKHVVTCNASNLSINCSCQMFEYEGVLCRHVLRVFQILQLREVPPRYILHRWTRNAEDGVFPDIESWSSSQELKSLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02168 760 SMART 26again6 657 684 IPR006564 GO:0008270
Cca08g02168 760 Pfam SWIM zinc finger 648 679 IPR007527 GO:0008270
Cca08g02168 760 ProSiteProfiles Zinc finger SWIM-type profile. 634 682 IPR007527 GO:0008270
Cca08g02168 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 21 119 - -
Cca08g02168 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 146 756 - -
Cca08g02168 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Cca08g02168 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Cca08g02168 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 146 756 IPR031052 GO:0006355
Cca08g02168 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 119 IPR031052 GO:0006355
Cca08g02168 760 Pfam MULE transposase domain 371 462 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02168 Cca-Chr8 54925010 54928129 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g02168 MULE 2.3e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02168 - - gmx:100780519 1424.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02168 08 54925010 54928129 Cca08g02168 08 54925010 54928129 ECH