Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02167 ATGTGTCCCGCTTCAGTCTTGTGGCCAATCTTGTTCCTAGTTTTCATGTTCATTGTGGTTCTAACCACCGTGGAGTACACCTCAATCGGTACCTACATACTCATGGGTTGCATATTGGGATTGCTTTTGTGGTATTGGATTGGTTCCATTATATTAGATCGGAATAGAAGGAGATCTCAAAACACACCAATCATGGGAGACATCGAATCTGAAGACATAATACATAGTGATCTCACACCAACGAGAACTCACATTGTGATTGCGAGAGTAAGGGCTCGAAGGGAACCATATTGGCAAGACCTACAACTGCTTTCTTTTAACCCTAAGGCACATATGGCTAGGTTGGCTATGAGAGCATTGCCACCTGTTACGTGTTTTCGTGAAACCAATGAGTCTCAACGTGACTGTCCTATTTGCATGGAGGATTTTAAAGATGGAGAGTTAATTCAACCATTTGCGGTGTGTGCACATGAGTTTCATTCGTCTTGTGTTAACTCTTGGTTACTCGGTGGAAAAACTACTTGTCCAGTTTGTCGTGAGGAGTTGTCAATTATTACTATCCATTAG 567 0.4215 MCPASVLWPILFLVFMFIVVLTTVEYTSIGTYILMGCILGLLLWYWIGSIILDRNRRRSQNTPIMGDIESEDIIHSDLTPTRTHIVIARVRARREPYWQDLQLLSFNPKAHMARLAMRALPPVTCFRETNESQRDCPICMEDFKDGELIQPFAVCAHEFHSSCVNSWLLGGKTTCPVCREELSIITIH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02167 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 102 182 - -
Cca08g02167 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 185 IPR013083 -
Cca08g02167 188 Pfam Ring finger domain 135 179 IPR001841 -
Cca08g02167 188 ProSiteProfiles Zinc finger RING-type profile. 136 179 IPR001841 -
Cca08g02167 188 PANTHER OS06G0666500 PROTEIN 102 182 - -
Cca08g02167 188 SMART ring_2 136 178 IPR001841 -
Cca08g02167 188 SUPERFAMILY RING/U-box 114 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02167 Cca-Chr8 54912658 54913247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02167 112 181 C3H Transcription Factor Family AT1G22670 38.889 1.71e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02167 - - aprc:113865236 187.578