Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02160 ATGATCTGTTCTCCAATGGCTTCTACAGCAGCTCCACCCCAGCTTCTAATGTCCAATCTCATGTTTGGAAATCACACTTACCCACAAGCAAAGTTTTTGAGGACAGCATCCACTAATGGTTTACAAGTCCACGCCTCTCGCAGACCCCAGAGACCACCCCCTGGAGTTGACACCAGAATCCATTGGGACAATGAAGATGAAGGTTGGGTTGGAGATAAGGGTACCAAGCAGAAGCAGCAACAACAGACCGATAACAACATGTTGGCTGATGACTTTCCTGATTTGCTCACCACTTCTTTGGGTTCTCATTATGAATTCTTAGGAGTATCACCGGATGCGAATTTAGAAGAAATTAAAGTTGCTTATCGGAAGCTATCAAAGGAATATCATCCAGACACAACTTCCCTCCCTCTCAAAACCGCATCAGAAAAATTCATGAAATTAAGAGAGGTTTACAACGTTCTTAGCAACGAAGAGAGTCGAAAATTTTATGATTGGACCCTTCTTCAAGAGGCTGCAAGCCGCCACGCTGAGAAGATGAAAATGAAATTGGAGGATCCAAGGGAGCAAGAACTGAAGAATTGGGAATCTGTTCCAGACATGGTTGACCGCCTTGGTGGGAAGAATATGAAGCTTAGTGATCAGGCAGTTTCTGCCATCACTATTGATGTTTTTATCATTATTTTTTCCATATGTTGCATCATCTATGTTATTTTCTTTAAAGAACCATATTACTATTAG 741 0.4197 MICSPMASTAAPPQLLMSNLMFGNHTYPQAKFLRTASTNGLQVHASRRPQRPPPGVDTRIHWDNEDEGWVGDKGTKQKQQQQTDNNMLADDFPDLLTTSLGSHYEFLGVSPDANLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTLLQEAASRHAEKMKMKLEDPREQELKNWESVPDMVDRLGGKNMKLSDQAVSAITIDVFIIIFSICCIIYVIFFKEPYYY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02160 246 Pfam DnaJ domain 103 165 IPR001623 -
Cca08g02160 246 SMART dnaj_3 101 160 IPR001623 -
Cca08g02160 246 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 6 244 IPR044618 -
Cca08g02160 246 SUPERFAMILY Chaperone J-domain 101 169 IPR036869 -
Cca08g02160 246 ProSitePatterns Nt-dnaJ domain signature. 145 164 IPR018253 -
Cca08g02160 246 PRINTS DnaJ domain signature 104 122 IPR001623 -
Cca08g02160 246 PRINTS DnaJ domain signature 122 137 IPR001623 -
Cca08g02160 246 PRINTS DnaJ domain signature 140 160 IPR001623 -
Cca08g02160 246 ProSiteProfiles dnaJ domain profile. 102 168 IPR001623 -
Cca08g02160 246 Gene3D DnaJ domain 93 188 IPR036869 -
Cca08g02160 246 CDD DnaJ 103 157 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02160 Cca-Chr8 54867033 54868050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02160 103 165 C2H2 Transcription Factor Family AT1G74250 37.313 2.31e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02160 K23051 - gmx:100805859 361.688