Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02153 ATGTACAATGCTGAGAAGCGGGGAAAGCGCCAGGTCATGATTAGGCCATCCTCAAAAGTGATTATAAAATTCCTTTTGGTGATGCAAAAGCATGGGTACATTGGAGAGTTTGAGTACGTTGATGATCACAGAGCTGGAAAAATTGTGGTTGAATTGAATGGTAGATTGAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTTCCCTCGAGACAGTTTGGGTATATTGTGTTGACTACCTCTGCTGGAATCATGGATCATGAAGAAGCAAGGAGAAAGAATGTTGGTGGGAAAGTGCTGGGTTTCTTTTACTAG 354 0.4266 MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02153 117 ProSitePatterns Ribosomal protein S8 signature. 87 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca08g02153 117 SUPERFAMILY Ribosomal protein S8 2 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
Cca08g02153 117 PANTHER OS02G0478600 PROTEIN 1 117 - -
Cca08g02153 117 Gene3D - 1 56 - -
Cca08g02153 117 Gene3D - 57 117 - -
Cca08g02153 117 Pfam Ribosomal protein S8 2 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca08g02153 117 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02153 Cca-Chr8 54784670 54786026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02153 1 117 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 98.291 3.47e-84 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02153 K02957 - gmx:100799973 238.81