Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02141 ATGAAGATGTCAATATCATCAGTGTGTGCCTGCAAACAAGAGCTGCCCCTAGTAAATATACAAAAGGGACTAAGGATGGAGTCGTTATTTCAGCAGAGGAGCAAGGAGAAGGTGGTGGTGATAATGGGGGCGACGGGAACAGGGAAGACGAAGTTGGCCATCGACGTGGCAAAACACTTTCAACCAGCGGAGATAGTGAACTCGGACAAAATGCAAGTGTACAAGGGCCTTGACATCACCACGAACAAGGTGAGCGAAGAGGAGTGTTTGGGGGTCCCACATCATCTGCTAGGCACTGTGGACCCTAATATAAATTTCACAGCCAACGACTTCTGTCGCCACGCCACGCTGGCAATCGACTCCATCGTGGAAAGGGACGGCTTACCCATCATCGCTGGCGGCTCCAACTCCTACCTCGACGCGCTCGTCAACCACCACACCGAGTTCAGGTTAAGGTACGACTGCTGCTTCCTCTGGGTCGACGTCGCTCTCCCCGTTCTCCACTCCTCCCTCCAGGCACGTGTCGACCGCATGATCGACGCCGGCCAGCTCCACGAGGTTCGCCAGTTCTTCGACCCGCGTGCCGACTACACCAGGGGGATTCGGAGAGCCATCGGGGTCCCCGAGTTCGACCACTTTCTCGCCGCCGAGGCCTCCGGCGCCGACCAGACCACGCTCCACCGACTCCTCCAGGCTGCCATTGCCAGCCTCAAGATCAACAACTGCACGCTCGCCAACCGTCAGATTCAGAAGATTCACCGCTTGCACGCCTTGTGGAAACGCAGCATGCACCGCCTCGACGCCACCGAGGTATTCCTCGGATCGCGCGACGCCTGGCACGATCACGTCCTCTCCAACACCTTGCTCATCCTCCACAAATTCCTCTACGACGACACCAAAACGCACCTCCCCGCCGGAATCCTCTCCCGGAAAGTTTCCCCCCTGCCGGTAGCCATGGCGGCTACCCATTAG 972 0.5782 MKMSISSVCACKQELPLVNIQKGLRMESLFQQRSKEKVVVIMGATGTGKTKLAIDVAKHFQPAEIVNSDKMQVYKGLDITTNKVSEEECLGVPHHLLGTVDPNINFTANDFCRHATLAIDSIVERDGLPIIAGGSNSYLDALVNHHTEFRLRYDCCFLWVDVALPVLHSSLQARVDRMIDAGQLHEVRQFFDPRADYTRGIRRAIGVPEFDHFLAAEASGADQTTLHRLLQAAIASLKINNCTLANRQIQKIHRLHALWKRSMHRLDATEVFLGSRDAWHDHVLSNTLLILHKFLYDDTKTHLPAGILSRKVSPLPVAMAATH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02141 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 195 IPR027417 -
Cca08g02141 323 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 302 - -
Cca08g02141 323 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 263 - -
Cca08g02141 323 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 302 IPR039657 -
Cca08g02141 323 Pfam IPP transferase 72 146 - -
Cca08g02141 323 Pfam IPP transferase 150 250 - -
Cca08g02141 323 Gene3D - 35 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02141 Cca-Chr8 54613988 54615767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02141 152 301 C2H2 Transcription Factor Family AT2G27760 32.203 3.85e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02141 K10760 - gmx:100812928 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02141 08 54613988 54615767 Cca08g02141 08 54613988 54615767 ECH
Cca11g02868 11 56050182 56051979 Cca08g02141 08 54613988 54615767 PCT