Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02136 ATGGGTATTTCGTGGAGTGGCAGCAGAAGAAGAAATAATTACATCCAAAACCCACCCCCACTCCCGCCCCCTTACTTTTACTCTACAGAATCCCACCCCCCTACTCTCCTTcctccgccgccgccgccgccgcAAAATTACTTCCCTCCTCCGCACTGCACCAACTACGGCGCTCCCCCACCCTTGCCGCCACCGCCGCAGACCCACTCGATTTCGTTCTACTACTCCAACCCCAACGGCTACACCGCCAATCGCGTTCCCTTCCAGCCCTTCTACCAGCCTCAGCCCGGCGCATGGCCCGCCGCCCGTCCTTCCTCCTCCTCCTCTCCGCCGCCCTATGTGGATCACCAGACGGCGAAGAAGATAAAGAACTACGTTAATGTCCATAAAGATACCCTGCGCCTCGAGGTTGACGAGGACAATCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTCTCTATGATGGCAGCATTACTATCTTCTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTAATTCCTGAAGCATTTGAGCCAATCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTTCTCAGACATCAGGAACGGGAATTGACCTGGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTATTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACATCCTCAGCAGATGAAGCTCCTGGTGATTGCTTGTTGGATGCATCCCCTCACATGCAAATAACCCAAGGTGTCTTAGTGAAAAGTAATGGTGGTGATCCTTTCCTGATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCATCAGCAGCTGATTTTGATGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGAGTGTGCGAAAGCTCTGCGACTTCAATCCAATAAATGCCCCATATGCCGTCAATCTATTGAGGAGCTTATAGAGATCAAGGTGAATAATGGCAATCAATGA 1101 0.4659 MGISWSGSRRRNNYIQNPPPLPPPYFYSTESHPPTLLPPPPPPPQNYFPPPHCTNYGAPPPLPPPPQTHSISFYYSNPNGYTANRVPFQPFYQPQPGAWPAARPSSSSSPPPYVDHQTAKKIKNYVNVHKDTLRLEVDEDNPDHHLISFVFDALYDGSITIFYFAKEEEKCRFVPLIPEAFEPIRIPFQKGVGQKFSQTSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTSSADEAPGDCLLDASPHMQITQGVLVKSNGGDPFLIKVVRQILWIDGVRYELRELYGIGSSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRLQSNKCPICRQSIEELIEIKVNNGNQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02136 366 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Cca08g02136 366 SMART ring_2 311 349 IPR001841 -
Cca08g02136 366 MobiDBLite consensus disorder prediction 1 62 - -
Cca08g02136 366 MobiDBLite consensus disorder prediction 1 15 - -
Cca08g02136 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 365 - -
Cca08g02136 366 MobiDBLite consensus disorder prediction 100 114 - -
Cca08g02136 366 SUPERFAMILY RING/U-box 310 356 - -
Cca08g02136 366 MobiDBLite consensus disorder prediction 16 62 - -
Cca08g02136 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Cca08g02136 366 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Cca08g02136 366 PANTHER MAHOGUNIN 1 365 IPR045194 GO:0061630
Cca08g02136 366 MobiDBLite consensus disorder prediction 96 116 - -
Cca08g02136 366 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 310 350 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02136 Cca-Chr8 54519817 54525091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02136 89 366 C3H Transcription Factor Family AT3G06140 58.885 7.76e-108 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02136 - - gmx:100786054 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02136 08 54519817 54525091 Cca08g02136 08 54519817 54525091 ECH