Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02134 ATGTGCAAGGACGTGGTGTCTAACGATATTGCGAAGGAAGGCTCCGAAATGGCCACGGTTGATGTCGTTTTGCGGGAGGGTGAATTAGATTGCTTAGGTAGTCGAAACGGCACGGGATCCATTCGGAATGACATCGTGGAGAATGGTGATGGCAGTGCTAATGTTGCTGTGGAGGAGTTGGCGAGGTTGGAGGTGGTAATTGTACCTATTTGGAAGAAGGATGATGAAAATGGGGCAGTTCTAAATGCAACATCATCTGTAAAAGATGCTCTTCAAAGATCTGGGATTAAAGTTAAACTTGATGACTCAGATCAAAGAGCTCCTGGATGGAAATTCAATTTCTGGGAAATGAAGTTTCTGATTATATTTTACATCATATTTCAAGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGTATGGTGATATCCAGGAGAGATATCCCTGGGAAGCAAGGGAAAGTATTTGGAATCTCCATGGAGCCTTCAAATATGGAAGCTTATGTTAAAGACAAGTTGGATGAGATACAGTCATCTCTTTTGGAAAGGGCAATTGCATTTCGAGACAGGACTCTTGGTCTTACTTTGGCACGTATAAATACAGAAGACTTTGATTCGTATGGCCAAAGGAACTTACTAGCTGAAAACAAAGAGAGAGAGAATAGCAAAGACTCAACCATAGTTATCCAGAACCAAATCATGTCTCACATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGTCGTTGACCCCATGTTTCTATATCAAAAGGGGGGACCAAGCATCTATAATAGGAGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCTCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGGACACTGCAGACACCTTTTCATCAACTTGATAGCTCCTCCATCCTTGGGAATAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCTGATGTTGAAGTGAAAATCTCGGGTTCAAATGTGATCTTGAAAGTCATTTCCCACAGAATTCCTGGTCAAGTTGCAAAGATCATATCTGTTTTGGAAAGTCTTTCATTTGAAGTTCTTCATCTAAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTAAGTCTGGAGGAACTAGCTATGGAAGTGCAACAAAGCTTCTGCTCAGAGGCTATAATTGCGCTGTGA 1290 0.4209 MCKDVVSNDIAKEGSEMATVDVVLREGELDCLGSRNGTGSIRNDIVENGDGSANVAVEELARLEVVIVPIWKKDDENGAVLNATSSVKDALQRSGIKVKLDDSDQRAPGWKFNFWEMKFLIIFYIIFQGVPLRIEIGPRDVASGSMVISRRDIPGKQGKVFGISMEPSNMEAYVKDKLDEIQSSLLERAIAFRDRTLGLTLARINTEDFDSYGQRNLLAENKERENSKDSTIVIQNQIMSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQTPFHQLDSSSILGNNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVAKIISVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAIIAL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02134 429 Gene3D - 238 304 IPR036638 GO:0046983
Cca08g02134 429 Pfam Anticodon binding domain 64 174 IPR004154 -
Cca08g02134 429 Gene3D - 59 191 IPR036621 -
Cca08g02134 429 Pfam Helix-loop-helix DNA-binding domain 239 287 IPR011598 GO:0046983
Cca08g02134 429 CDD bHLH_AtFAMA_like 239 301 - -
Cca08g02134 429 PANTHER TRANSCRIPTION FACTOR MUTE 239 427 - -
Cca08g02134 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 287 IPR011598 GO:0046983
Cca08g02134 429 SUPERFAMILY Class II aaRS ABD-related 60 194 - -
Cca08g02134 429 PANTHER TRANSCRIPTION FACTOR FAMA 239 427 IPR044283 GO:0003700|GO:0010052
Cca08g02134 429 SMART finulus 242 293 IPR011598 GO:0046983
Cca08g02134 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 305 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02134 Cca-Chr8 54436703 54453661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02134 239 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.672 1.00e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g02134 HGTP_anticodon 1.1e-08 CL0458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02134 - - gmx:100810771 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02134 08 54436703 54453661 Cca08g02134 08 54436703 54453661 ECH