Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02127 ATGGATCAAAATCAGCAAGGTCAAGGGGTTAATCATCCAACACAAGCAGCACGTGGCAAGAACAAGTATGAATTCAACCCCATGGTGGGACCTAGCAATCCTCCAACTCAGATTGTTGGTCCTTCTAACCTTTCACCCCACCCAAGAGATGCTCCTGAATACACCAACCAGTTGCAACAAGATGTCTTACAACAACAACTCAACAACTTTTGGGCAAAACAATGTCAGGAAATTGGGGAGGCTACTAATTTCAAGACTCCCAACATGCCTTTGTCTAGGATTAGGAAGATCATGAAGGCCGATGAGGATGTGAGGATGATATCAGCTGAGACTCCTATGGTGTTTGCTAAGGCATGTGAAATGTTCATTCAGGAGCTCACAATAAGGGCATGGGCTAATGCTGAGGAAAACAAAAAGAAGACACTTCAAAAGAGTGACATTGCATCTGCAATCACAAAGAATGATATGTTTGATTTTCTTGTTGACATTTTCCCCAGGGATGACAAATTGGAGCATGCAGACATACCAAGAAGAGGCACTGCTCCAATTGAGAATGTTCCTTACTATTATTACATGTCACCCCATCAGTATGTTGCAAGGCCACCACACGGGGCTCCAGGAATGGTCATGGGAAGGCCCATTCCTGATCAGAATCAAAATGGGCTGCAAACCCGTCCTTTTTTTCCAACTCCAATGAGGCCCACTTCGGATGAATGA 717 0.4435 MDQNQQGQGVNHPTQAARGKNKYEFNPMVGPSNPPTQIVGPSNLSPHPRDAPEYTNQLQQDVLQQQLNNFWAKQCQEIGEATNFKTPNMPLSRIRKIMKADEDVRMISAETPMVFAKACEMFIQELTIRAWANAEENKKKTLQKSDIASAITKNDMFDFLVDIFPRDDKLEHADIPRRGTAPIENVPYYYYMSPHQYVARPPHGAPGMVMGRPIPDQNQNGLQTRPFFPTPMRPTSDE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02127 238 MobiDBLite consensus disorder prediction 214 238 - -
Cca08g02127 238 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3-RELATED 16 197 - -
Cca08g02127 238 SUPERFAMILY Histone-fold 66 160 IPR009072 GO:0046982
Cca08g02127 238 MobiDBLite consensus disorder prediction 1 15 - -
Cca08g02127 238 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 151 IPR003958 -
Cca08g02127 238 MobiDBLite consensus disorder prediction 1 53 - -
Cca08g02127 238 Gene3D Histone, subunit A 52 166 IPR009072 GO:0046982
Cca08g02127 238 MobiDBLite consensus disorder prediction 30 53 - -
Cca08g02127 238 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 16 197 - -
Cca08g02127 238 MobiDBLite consensus disorder prediction 216 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02127 Cca-Chr8 54356006 54357343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02127 70 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 54.878 2.55e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca08g02127 CBFD_NFYB_HMF 2.2e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02127 K08066 - gmx:100808341 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02127 08 54356006 54357343 Cca08g02127 08 54356006 54357343 ECH