Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02126 ATGGATCAAAACCAACATGGTCAACCAGCAAGAGGGATTAGTCTTTCAACAAGAGAAGCACGTGGGAAAAACCCCATGATGGAAGCTACCAATCCTCCACCTCAGGCAACTAATACTTGTATACCTCCACCATACCCAATACAACAACAATATGCTCCCCATTACATGTATGACCCACAAGAAGACCACTTGCAACATCAACTCAACAATTGTTGGGCTAGACTGTGTCAAGAAATTGAAGAGACCACCGACTTCAACACTCACAGTTTGCCTTTGGATAAGATTGAGAAAATCATGAAGGATGATGGGGATGTGCACATGGTATCAGCTGAGGCTCCTGTGTTGTTTGCTAAGGCTTGTGAGCTGCTTATTCATGAGCTCACAATGAAGGCTTGGGTTAATGCTGATAAGAGTAAAAGGGACTTAATTCAGAAGTGTGACATTGAAGCTGCAATTACAAATACTGATGAGTTTGATTTTCTTGCTGATGTTGTCCCCATAGAGCATGTAGGCATATCAAGAAGAGACATTGATCCAACTCAGATTGTTCCTTACTATTACATGCCACCTCATCAGCATGTTATAGGCCCACCATTTGATGCTCCATAA 609 0.422 MDQNQHGQPARGISLSTREARGKNPMMEATNPPPQATNTCIPPPYPIQQQYAPHYMYDPQEDHLQHQLNNCWARLCQEIEETTDFNTHSLPLDKIEKIMKDDGDVHMVSAEAPVLFAKACELLIHELTMKAWVNADKSKRDLIQKCDIEAAITNTDEFDFLADVVPIEHVGISRRDIDPTQIVPYYYMPPHQHVIGPPFDAP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02126 202 Gene3D Histone, subunit A 54 166 IPR009072 GO:0046982
Cca08g02126 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 152 IPR003958 -
Cca08g02126 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3-RELATED 24 193 - -
Cca08g02126 202 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 193 - -
Cca08g02126 202 SUPERFAMILY Histone-fold 79 169 IPR009072 GO:0046982
Cca08g02126 202 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02126 Cca-Chr8 54347446 54350361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02126 68 188 CCAAT-HAP5 Transcription Factor Family AT1G56170 52.344 3.68e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca08g02126 CBFD_NFYB_HMF 1.3e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02126 K08066 - gmx:100808341 199.904