Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02120 ATGGCAAATTTCACcttcttctcttcttcatcttctCTGTCACACATTCCATCCATTTCTGCTGCACCTGTTGACGACTCCTCCGAAGACTCCTGTAGTATATGCCTAGAGTCCTTCAACGTTCATGACCCATCCATTGTTACCTGTTGCAAACATGAATACCATCTGCATTGCATTCTTGAATGGTCACAAAGAAGTAAAGAGTGTCCAATATGTTGGCAATCACTTGCTTTGAGAGACCCTGCCAGTCAAGAGCTTCTAGCTGCAGTGGAAATTGAAAAGCGCACGAGATCAAGAAACATGACTAATTCTAGGGTCTCCATTGAAGAGCTTAATGATAGCGATGATGATTCTTGCTCAGATGACTCTGATTCTGATGACCAAATTATGAGGCGCCTAGTTGCTGTTGCGAGTAGAGCTCGTTGTCTTGGAAGACGGGAAAGGAAGAGATCACCTGGTGCTGGTTCATCGGACGTACTTGGTTCCAACTCTTCCATGCACGTATCTGGGGTGCAAACAACACTTGCAACTTCACCACCTGGGGGCAGTTTTCTGGCTTCCACTGTACCATATACAGTTAATGTTCCACCTCTGGCATCAAATGCTACGCCAGCGGGTGCAAGGAGACAAAACACTTCTGAGATGATTTCCTTCCCTGAGTCCATCAAATCTAAATTTTCTGCTGCTTCAGCTAGATATAAGGAATCAATTTCTAAAGGTACGCGTGGCCTCAAAGAGAAGTTACTTGCTCACAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATCGCTGGAGTTTCACGGATGATTGAACGCCTTGAACTTAGCTCAAAACGGTCCAGTTCTACTCTGGTCTCTAGTGGGGGAACTTCAGGCTTACCTGAAAAAGAGAAGTCTGTTGAAGAGAATGGCATTGGGTCTTCTCCAAGTAAAGAGAGTGGAGGTGCAGTTGATGATGTTAGTTCAAATGTTCTCCCACTTGTTACTAACATGCAATCTTTTCGAATGAAAAATATTCCACCTGTTCAGACCGGAAATAATATGCTATGA 1071 0.4351 MANFTFFSSSSSLSHIPSISAAPVDDSSEDSCSICLESFNVHDPSIVTCCKHEYHLHCILEWSQRSKECPICWQSLALRDPASQELLAAVEIEKRTRSRNMTNSRVSIEELNDSDDDSCSDDSDSDDQIMRRLVAVASRARCLGRRERKRSPGAGSSDVLGSNSSMHVSGVQTTLATSPPGGSFLASTVPYTVNVPPLASNATPAGARRQNTSEMISFPESIKSKFSAASARYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVSRMIERLELSSKRSSSTLVSSGGTSGLPEKEKSVEENGIGSSPSKESGGAVDDVSSNVLPLVTNMQSFRMKNIPPVQTGNNML 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02120 356 MobiDBLite consensus disorder prediction 98 125 - -
Cca08g02120 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 313 - -
Cca08g02120 356 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Cca08g02120 356 SMART ring_2 32 72 IPR001841 -
Cca08g02120 356 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 313 - -
Cca08g02120 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 106 IPR013083 -
Cca08g02120 356 MobiDBLite consensus disorder prediction 284 326 - -
Cca08g02120 356 MobiDBLite consensus disorder prediction 310 326 - -
Cca08g02120 356 MobiDBLite consensus disorder prediction 144 176 - -
Cca08g02120 356 MobiDBLite consensus disorder prediction 156 176 - -
Cca08g02120 356 Pfam Ring finger domain 30 72 IPR001841 -
Cca08g02120 356 SUPERFAMILY RING/U-box 15 78 - -
Cca08g02120 356 MobiDBLite consensus disorder prediction 284 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02120 Cca-Chr8 54303922 54306491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02120 26 80 C3H Transcription Factor Family AT4G00335 47.273 3.96e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02120 K19043 - gmx:100805449 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02120 08 54303922 54306491 Cca08g02120 08 54303922 54306491 ECH