Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02119 ATGATCTCTTCAATGAAGTGCACAGCCTCATCTCTCACCTCTTCTGCTTTCTCATGCAGAAACCTTTCCTTTCCAAGGCCTAAACTTCTCACATTACCCACCATTCAACACTCTCACTTGTGCTCCCAGAGACCCCTGCATCTTTCATCCACTGAGGCCTTTGCATTGGTGAGAAGAAGGAATGTGACGGAGTGCCAGGCCTATGAAGCTGACAGGTCACGCCCACTGGAGATCAACATTGACCTGCCCGCTGAAGAGGCAGCCCAGAGGCTCAAGATTGGGCTCTACTTTGCCACCTGGTGGGCTTTGAATGTAGTCTTCAACATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCCTGGCTCACCTCCACCTTGTCCCTTGCTGCTGGCTCCCTCATGATGTTAATCTCATGGGCCACCAGGGTTGCTCATGTCCCTAAAGTTAACTTGGACTTCTGGAAAGCCTTGTTCCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTCCTGGTGTCAAGGTTCTTACTTGGAGAGGCATTCCCAATGCCGGTTTATCTATCACTCTTGCCAATTATCGGTGGTTGTGCACTAGCTGCTGTGACTGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCAAATTTGGCATTTGTCTTCAGGAATATATTCTCAAAGAAAGGGATGAAGGGGATGGCTGTTAGTGGAATGAACTATTATGCTTGTCTTTCCATGATGTCTCTATTAATTCTCACACCCTTTGCCATTGCTGTGGAGGGCCCCAAGGTTTGGGCTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTGGGTAGCTGCCCAGAGTGTGTTCTACCACTTGTATAATCAAGTCTCTTACATGTCACTTGATCAGATTTCTCCCTTAACATTTAGCATTGGGAACACAATGAAGAGGATTTCGGTGATTGTCTCTTCCATACTTATCTTTCACACGCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTTTATTCACAGGCTAAACAGTAA 1155 0.4684 MISSMKCTASSLTSSAFSCRNLSFPRPKLLTLPTIQHSHLCSQRPLHLSSTEAFALVRRRNVTECQAYEADRSRPLEINIDLPAEEAAQRLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVAHVPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMAVSGMNYYACLSMMSLLILTPFAIAVEGPKVWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAILGTFLYSQAKQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02119 384 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cca08g02119 384 PANTHER SOLUTE CARRIER FAMILY 35 25 384 - -
Cca08g02119 384 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 91 383 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cca08g02119 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 133 227 - -
Cca08g02119 384 Pfam Triose-phosphate Transporter family 91 380 IPR004853 -
Cca08g02119 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 283 381 - -
Cca08g02119 384 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 25 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02119 Cca-Chr8 54291752 54295026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02119 43 384 Antiporters AT1G61800 83.918 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02119 K15283 - gmx:100804205 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02119 08 54291752 54295026 Cca08g02119 08 54291752 54295026 ECH
Cca11g02891 11 56256957 56265066 Cca08g02119 08 54291752 54295026 PCT