Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02114 ATGAGTTGCTTTCCATGCTGCAAGACAAATAATAAATCAACAACCTCTTTCAAAGGATCCCCCAACAAAGCTTCCAAAGGAAGGAGAACATTCAAATCATTAGCTGCAGCTATGTCACTTAAAACAGGTAGCAGCAGGAACAGACAAATAGATGCGGAGATAAGAAAATATGGATCTGCAAAAAATGATATCAAAGTATTCACATATGAACAACTTGTTGAAGCCACAAACAACTTCAATTCTGATTGCCTGTTAGGCGAAGGTGGATTTGGGAATGTTTACAAAGGATTCATAAAAACTATTGATCAAACTGTAGCTGTGAAGGTACTGAACAGGGATGGAGCCCAAGGAACACGTGAATTTTTCGCAGAAATACTGATGTTAAGCATGGTTCAACATCCAAACCTTGTGATGCTCATTGGTTATTGTGCAGATGGTGCTCATAGGATTTTAGTTTATGAATTCATGGCCAATGGGTGTTTGGAAAGTCACCTTCTAGAAATAGGTGAAGATAAGGAGCCTTTGGATTGGAAGACTAGAATGAAAGTAGCCGAGGGAGCAGCTAGGGGACTTGAATATTTGCATAATGGAGCAAATCCAGCAATCATATACCGTGATTTTAAGTCATCTAATATATTGTTAGATGAAAATTTCAATCCAAAGCTCTCTGATTTTGGTCTTGCTAAGATTGGTCCTATAGAAGGCCAGGAACATGTGTCAACCAGGGTGATGGGAACCTTTGGCTACTGTGCACCAGAATATGCTGCTACAGGTCAGCTAAGCGTGAAGTCAGATATTTATAGTTTTGGGGTTGTGTTTTTGGAAATAATCTCGGGTAGGAGAGTATTTGACACTAGAAGAGCTACAGAAGAGCAAAATTTGATCGACTGGGCACAACCTTTGTTTAACGATAGAACCAAGTTCACTCTAATGGCTGATCCTTTGCTTAAAGGTAAGTTCCCTGTAAAGGGTCTCTTTAAAGCCCTTGCAGTGGCAGCAATGTGTCTCCAAGAGGAAGCTGAGACACGACCTTACATGGATGATGTTGTGACAGCTGTTACACACCTAGCAGTGCACACAATTGAAGAAAAAGACATAGCTGGTGAATCTTTAAAAAGCGCCGGACATGTTGAATCTTTTAGAGTTGCAAGTTTAGCTGAATCTGAAAGGACTTAG 1176 0.4022 MSCFPCCKTNNKSTTSFKGSPNKASKGRRTFKSLAAAMSLKTGSSRNRQIDAEIRKYGSAKNDIKVFTYEQLVEATNNFNSDCLLGEGGFGNVYKGFIKTIDQTVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVMLIGYCADGAHRILVYEFMANGCLESHLLEIGEDKEPLDWKTRMKVAEGAARGLEYLHNGANPAIIYRDFKSSNILLDENFNPKLSDFGLAKIGPIEGQEHVSTRVMGTFGYCAPEYAATGQLSVKSDIYSFGVVFLEIISGRRVFDTRRATEEQNLIDWAQPLFNDRTKFTLMADPLLKGKFPVKGLFKALAVAAMCLQEEAETRPYMDDVVTAVTHLAVHTIEEKDIAGESLKSAGHVESFRVASLAESERT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02114 391 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02114 391 Pfam Protein kinase domain 83 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02114 391 Gene3D Phosphorylase Kinase; domain 1 63 155 - -
Cca08g02114 391 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 389 - -
Cca08g02114 391 CDD STKc_IRAK 85 350 - -
Cca08g02114 391 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Cca08g02114 391 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Cca08g02114 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Cca08g02114 391 Gene3D Transferase(Phosphotransferase) domain 1 156 374 - -
Cca08g02114 391 PANTHER OS07G0668900 PROTEIN 1 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02114 Cca-Chr8 54233988 54236843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02114 1 358 Glycoside Hydrolase AT3G07070 53.022 2.00e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca08g02114 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02114 - - gmx:100305361 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02114 08 54233988 54236843 Cca08g02114 08 54233988 54236843 ECH