Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02109 ATGATGCAGCCAGGACCCGGCATGGCTCCTCCCAGCATGGGCCAACAGCCGCCGCAACAGTACCAGCAGCCGCCGCCACAGCAGCAGCAGCAGCCATACGTCATGATGCCGCCGCAGCCTCAGGCGCCGCCTCCCATGTGGGCTCCCTCCGCCCAGGCTCCGCCGCCGCCGCAGCAGCAGCAGCCTGCCAGCGCCGACGAGGTTCGGACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTTTACACATGCTTTGCTCATACTGGCGAGGTTACATCAGTTAAAGTGATTCGAAACAAGCAAACTAGTCAATCTGAAGGTTATGGATTTATTGAGTTTAATAGTCGTGCTGCAGCTGAGAGGATTCTCCAAACGTATAATGGGTCTATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGACATGACGATTCTCCTGATCATACCATATTTGTTGGTGACCTTGCTGCAGATGTTACTGATTATCTCCTTCAAGAGACATTTAGGGCCCGATATAACTCGGTCAAGGGGGCAAAGGTTGTTATTGATAGGCTAACTGGCCGGACCAAAGGGTATGGCTTTGTAAGGTTTGCTGATGAGAGTGAGCAAGTGAGGGCTATGTCTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGAATTGGACCAGCCTCTAATAAAACCCCAGCCACTCAGCCAAAAGCTTCATATCAGAATGCTCAACctcaaggcacacagaatgagaatgatccaaacaatacaactatttttgttggcaatctggatcctaatgtcactgatgatcatttgaggcaagttttcagccagtatggagaattagttcatgtgaagattccagctggcaagcgatgtgggtttgtccaattCACAGACAGGAGCTGTGCTGAAGAGGCCCTGCGGATGTTAAATGGGACACTATTGGGAGGACAAAACGTTCGACTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCGCAGCCAGATCAAAACCAGTGGAATGGTGCTGCTGCTGGATATTACGGATATGCTGCTCAAGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCAGGGTATCCTGGTTATCAACCACCTCAGCAACAGCAACAAATAGGATATAGTTGA 1218 0.4433 MMQPGPGMAPPSMGQQPPQQYQQPPPQQQQQPYVMMPPQPQAPPPMWAPSAQAPPPPQQQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGSIMPNGGQSFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMSEMQGVLCSTRPMRIGPASNKTPATQPKASYQNAQPQGTQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFTDRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQPDQNQWNGAAAGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYPGYQPPQQQQQIGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02109 405 CDD RRM3_NGR1_NAM8_like 268 339 - -
Cca08g02109 405 MobiDBLite consensus disorder prediction 385 405 - -
Cca08g02109 405 MobiDBLite consensus disorder prediction 232 269 - -
Cca08g02109 405 CDD RRM1_SECp43_like 70 150 - -
Cca08g02109 405 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 23 402 - -
Cca08g02109 405 Gene3D - 250 351 IPR012677 -
Cca08g02109 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Cca08g02109 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Cca08g02109 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Cca08g02109 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Cca08g02109 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Cca08g02109 405 Gene3D - 10 154 IPR012677 -
Cca08g02109 405 CDD RRM2_SECp43_like 161 240 - -
Cca08g02109 405 SUPERFAMILY RNA-binding domain, RBD 151 256 IPR035979 GO:0003676
Cca08g02109 405 SUPERFAMILY RNA-binding domain, RBD 255 369 IPR035979 GO:0003676
Cca08g02109 405 SMART rrm1_1 163 237 IPR000504 GO:0003723
Cca08g02109 405 SMART rrm1_1 70 145 IPR000504 GO:0003723
Cca08g02109 405 SMART rrm1_1 270 337 IPR000504 GO:0003723
Cca08g02109 405 MobiDBLite consensus disorder prediction 236 269 - -
Cca08g02109 405 SUPERFAMILY RNA-binding domain, RBD 45 148 IPR035979 GO:0003676
Cca08g02109 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Cca08g02109 405 MobiDBLite consensus disorder prediction 1 66 - -
Cca08g02109 405 Gene3D - 155 249 IPR012677 -
Cca08g02109 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 402 - -
Cca08g02109 405 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02109 Cca-Chr8 54184273 54188998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02109 70 360 Eukaryotic Initiation Factors Gene Family AT2G23350 26.846 6.50e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02109 - - gmx:100801562 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02901 11 56350748 56354899 Cca08g02109 08 54184273 54188998 PCT