Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02097 ATGTCTTGCTCCAATCTCACAATGTTGGTCTCCTCAAAACCCTCCCTTTCCGACGGCTCCAGCCTCTCCTTCCGCTCCGTCCTCAACCCTTTTCAGCTGCCATCACAAAACCcctccaccgcccctccccgctcctcctccgccgccCCAATCCAGTGCGGCCTCCGCGAGCTCCGAACCCGCATCGAATCCGTCAAGAACACGCAGAAGATCACCGAGGCCATGAAGCTGGTGGCTGCCGCCAAAGTCCGAAGAGCCCAAGAAGCGGTGGTGAACGCACGACCCTTCTCGGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAACAGCTCCAAACCGAAGACATCGACATTCCCCTCACCAAAATCAGGCCCGTCAAAAAGGTCGCTCTCGTCGTCTGCACCGGCGACCGCGGCCTCTGCGGCGGCTTCAACAACAACATCATCAAAAAAGCCGAGGCAAGAATCGCTGAGTTGAAAAAGCTTGGCCTTGAATACACCGTCATCAGCGTCGGCAAAAAGGGTAACTCTTACTTCATTCGCAGGCCTTATATCCCCGTCGATAGGTTCCTCGAGGGTGGCACTCTTCCCACCGCCAAGGAAGCTCAAGCCATCGCCGATGATGTTTTCTCACTCTTCGTTAGCGAGGAGGTTGACAAAGTTGAGCTTTTGTACACTAAGTTTGTGTCTTTGGTGAAATCCGATCCCGTGATTCACACGTTGCTGCCACTCTCCCCGAAGGGAGAGATTTGTGACGTGAATGGGGTTTGCATTGATGCCGCTGAAGATGAGTTTTTTAGGTTGACTACAAAGGAGGGAAAGTTGACTGTGGAGAGGGATGTTGTGAGGACTAAAACCGCAGATTTTGAAGCCATTTTGCAGTTTGAGCAGGACCCTGTGCAGATTCTTGATGCCTTGTTGCCCTTGTATTTGAACAGCCAGATTCTTAGGGCGTTGCAGGAGTCTTTGGCCAGTGAGCTTGCAGCCAGGATGAGTGCTATGAGCAATGCAACGGATAATGCCACTGAGTTGAAGAAGAACTTGTCCACTGTTTACAATAGGGAGCGCCAGGCCAAGATCACTGGGGAAATTCTCGAGATTGTTGCTGGTGCCAATGCCTTGCAATAG 1128 0.5018 MSCSNLTMLVSSKPSLSDGSSLSFRSVLNPFQLPSQNPSTAPPRSSSAAPIQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNARPFSETLVEVLYNINEQLQTEDIDIPLTKIRPVKKVALVVCTGDRGLCGGFNNNIIKKAEARIAELKKLGLEYTVISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCIDAAEDEFFRLTTKEGKLTVERDVVRTKTADFEAILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNATELKKNLSTVYNRERQAKITGEILEIVAGANALQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02097 375 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 54 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 374 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 374 - -
Cca08g02097 375 PANTHER ATP SYNTHASE GAMMA CHAIN 1 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 MobiDBLite consensus disorder prediction 1 20 - -
Cca08g02097 375 Gene3D - 122 245 - -
Cca08g02097 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 121 - -
Cca08g02097 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 270 374 - -
Cca08g02097 375 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 PRINTS ATP synthase gamma subunit signature 219 236 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 PRINTS ATP synthase gamma subunit signature 321 340 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 PRINTS ATP synthase gamma subunit signature 352 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 CDD F1-ATPase_gamma 55 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 Hamap ATP synthase gamma chain [atpG]. 52 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 Pfam ATP synthase 55 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca08g02097 375 ProSitePatterns ATP synthase gamma subunit signature. 360 373 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02097 Cca-Chr8 53948597 53950365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02097 30 375 Primary Pumps ATPases AT1G15700 69.886 2.39e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02097 K02115 - gmx:100037480 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02097 08 53948597 53950365 Cca08g02097 08 53948597 53950365 ECH