Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02088 ATGGCTGAGGGTACACAATCTAATGCTGAGTTGTTTGAGTGGCCGAAGAAAGATAAGCGCCGCTTCCTGCATGCTGTGTACCGTGTTGGTGATCTTGATCGCACCATCAAGTTTTATACTGAATGTTTCGGGATGAAGCTTTTGAGGAAAAGAGATATTCCAGAAGAGAAATATTCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCCCATTTTGTTGTGGAATTAACTTACAATTATGGGGTGAGCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATTTCAACTCCAGATGTTTACAAATTGGTTGAAAACATCCGGGCTAAGGGTGGAAACGTCACTAGGGAGCCTGCTCCAGTTAAAGGCGGGACATCTATTATTGCCTTTGTGAAGGATCCTGATGGTTATGCTTTTGAGCTCATCCAAAGAGCTTCAACCCCTGAGCCATTGTGCCAAGTAATGCTCCGTGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGGCTTTGGGTTTGAGGTTGGTAAGGAAGGTTGATAGACCTGAATACAAGTACACTTTAGCCATGCTTGGGTATGCAGAGGAGCATGAGACAATTGTGTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTTGTCAACTTAGTCACACAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGGCCAATTCCTGGCCTTAACACAAAGATCACTGCTTTCTTAGATCCTGATGGATGGAAAACTGTCTTGGTCGACAATCAAGATTTTCTGAAGGAACTTGAGTGA 864 0.4294 MAEGTQSNAELFEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDIPEEKYSNAFLGFGPEQSHFVVELTYNYGVSSYDIGTGFGHFAISTPDVYKLVENIRAKGGNVTREPAPVKGGTSIIAFVKDPDGYAFELIQRASTPEPLCQVMLRVGDLERSIKFYEKALGLRLVRKVDRPEYKYTLAMLGYAEEHETIVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITAFLDPDGWKTVLVDNQDFLKELE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02088 287 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
Cca08g02088 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 279 IPR029068 -
Cca08g02088 287 Gene3D - 148 287 IPR029068 -
Cca08g02088 287 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 287 - -
Cca08g02088 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 142 IPR004360 -
Cca08g02088 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 273 IPR004360 -
Cca08g02088 287 Gene3D - 1 147 IPR029068 -
Cca08g02088 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Cca08g02088 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Cca08g02088 287 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Cca08g02088 287 PANTHER LACTOYLGLUTATHIONE LYASE 11 287 - -
Cca08g02088 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 147 IPR029068 -
Cca08g02088 287 TIGRFAM glyox_I: lactoylglutathione lyase 152 282 IPR004361 GO:0004462|GO:0046872
Cca08g02088 287 TIGRFAM glyox_I: lactoylglutathione lyase 8 154 IPR004361 GO:0004462|GO:0046872
Cca08g02088 287 CDD GlxI_Ni 23 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02088 Cca-Chr8 53869901 53874440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02088 154 278 Calmodulin-binding Proteins AT1G08110 27.333 2.14e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02088 K01759 - gmx:100799447 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02088 08 53869901 53874440 Cca08g02088 08 53869901 53874440 ECH
Cca11g02922 11 56533533 56536718 Cca08g02088 08 53869901 53874440 PCT