Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02084 ATGAAGGCTGAGAATGAGAGTTCTCGCAGAGGGTCCCCAGCTTCAACCATTTCTTCCTCTTCCAATGTTGTTGACAACAACCCTTCTCACTCATCTCACTCGAGGGCCACTCGTCGTCGTTTTGCTTCTCATCAGCTTCCTGAGATAAGCCTCAAAACGCCTATGGTTAGGCCTTATGTTCGATCCAAAATGCCTAGGCTTCGTTGGACACCAGATCTCCATCGTTGCTTCGTGCATGCAGTTCAAAGACTAGGAGGAGAAGACAGGGCCACACCAAAGTTGATTTTACAGCTCATGAATGTAAAGGGGCTTACTATATCTCATGTCAAAAGCCATCTTCAGATGTACAGGAGCATGAGGCACGAGCAGATGAGTGAAGGTGCAAAGAAGAATGATATGGCACCAGATTTGCTAGCTCCAACATTCTCGACTCTTGGCCCAAGGTACGGCCACCAGAATCCTCGCCAAAGAAGCTGCACCCAAGACCTTGTTCCTATCCAACCTCAATGGAATGTTGATGAGCAAGATTTTTACAATGGAAAGCAAGGCGATGAACAGAAGGTGCAATCCTACATCATGTTCGAGGGTGTTCTGAGAGGCCAAACTGTCCGAGTCCAAGGGAATAAAAATGAAAATGGTGGTGAAAGCGAGCATGAAAGATTCGAAGACAGAACTGGCAAAGGAGAGAGAGTGGGACTGTCCCTGTCATTGAACTCACATCCATTCTTGAATCGCAGCGTTACTGGTCCAGATGCGAATGATGTCTCTCTTGAGCTCACCCTCTCTTAG 789 0.4728 MKAENESSRRGSPASTISSSSNVVDNNPSHSSHSRATRRRFASHQLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLILQLMNVKGLTISHVKSHLQMYRSMRHEQMSEGAKKNDMAPDLLAPTFSTLGPRYGHQNPRQRSCTQDLVPIQPQWNVDEQDFYNGKQGDEQKVQSYIMFEGVLRGQTVRVQGNKNENGGESEHERFEDRTGKGERVGLSLSLNSHPFLNRSVTGPDANDVSLELTLS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02084 262 Pfam Myb-like DNA-binding domain 67 117 IPR001005 -
Cca08g02084 262 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 14 204 - -
Cca08g02084 262 MobiDBLite consensus disorder prediction 211 228 - -
Cca08g02084 262 MobiDBLite consensus disorder prediction 8 31 - -
Cca08g02084 262 MobiDBLite consensus disorder prediction 1 48 - -
Cca08g02084 262 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 65 118 IPR006447 GO:0003677
Cca08g02084 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 204 IPR044848 GO:0003700
Cca08g02084 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 121 IPR017930 -
Cca08g02084 262 SUPERFAMILY Homeodomain-like 63 119 IPR009057 -
Cca08g02084 262 MobiDBLite consensus disorder prediction 203 228 - -
Cca08g02084 262 Gene3D - 64 122 - -
Cca08g02084 262 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02084 Cca-Chr8 53801356 53805697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02084 56 122 G2-like Transcription Factor Family AT2G42660 76.119 5.24e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g02084 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02084 - - ccaj:109803165 493.426