Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02080 ATGACTTTAAATCTTTGTGTACTGACTCCTAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATCATTTTACCTACTAATAGCGGACAAATTGGAGTATTACCAAATCATGCGCCTATTGCCACAGCTGTAGATATAGGTATTTTGAGAATACGCCTTAAAGACCAATGGTTAATGATGGCTCTGATGGGCGGTTTTGCTAGAATAAACAATAATGAGATCACTGTTTTAGTAAATGATGCGAAAAAGGGTAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTAAAATAGTAGAAGCTAATTTGAATAAGGCTGAAGGCAAGAGACAAAAAATTGAGGCAAATCTAGCTCTTAGACGAGCTAGGACACGAGTAGAGGCTATCAATGTGATTTCGTAA 402 0.3731 MTLNLCVLTPNRIVWDSEVKEIILPTNSGQIGVLPNHAPIATAVDIGILRIRLKDQWLMMALMGGFARINNNEITVLVNDAKKGSDIDPQEAQQTLKIVEANLNKAEGKRQKIEANLALRRARTRVEAINVIS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02080 133 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 1 81 IPR036771 -
Cca08g02080 133 Hamap ATP synthase epsilon chain [atpC]. 1 128 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cca08g02080 133 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 2 130 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cca08g02080 133 CDD F1-ATPase_delta 3 123 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cca08g02080 133 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 131 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cca08g02080 133 PANTHER ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC 1 131 - -
Cca08g02080 133 Coils Coil 96 116 - -
Cca08g02080 133 Gene3D - 89 133 - -
Cca08g02080 133 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 86 129 IPR020547 -
Cca08g02080 133 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 3 81 IPR020546 GO:0015986
Cca08g02080 133 Gene3D - 1 87 IPR036771 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02080 18 120 Primary Pumps ATPases AT5G47030 28.846 1.30e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02080 K02114 - gmx:3989273 243.432