Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02073 ATGGAGTGGACTAGAGGTCACACCTTGGGCCGGGGCTCCACTGCCGCTGTTTATATGGCGGAGTCCCGGCAGTCCGGCCAAGTGTTCGCCGTGAAGTCAGCGGAGCTCCACCGGTCGGAATTTCTCAAAAGGGAAGAGAGGATTCTTTCCATGTTGAAATGTCCTCAAATTGTGGCGTACCAAGGTTGTGACGTCACGTTGGAGAACGGTGTGCGCTGGTTCAACGTGTTCATGGAGTACGCGCCTCATGGGACGCTGGCGGAGCGCGGTGGTTGCATGGAAGAAGCGGTGGTGGGGTTTTACACGCGCCAAATTCTACAGGGGCTGAACTACCTCCACGAGAATGGGATAGTGCATTGCGACTTGAAAGGGCAGAACGTGCTGGTGACGGAGAAAGGGGTGAAAATTGCGGACCTTGGTTGCGCCCGGAGGGTGGGGGAGGAGTTTGTGATCGCCGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACGGTGTTGGAGATGATCACCGGGAAGGCGCCGTGGCACGGCGGCGGAGACCCTGCGGCGGTGGTTTATAGGATCGGATTCTCCGGCGAGGTGCCGGAGATTCCTAGTTTTATGTCGGAACAGGGGAGGGACTTTTTGGGGAAGTGTTTGAAGAGGGAGGCTAGTGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAGTGCACGGAATTGAATTTGTTGTTGTTGGATTCGGACACTCCCACATGTGTGTTGGAACGAGGGTTTTGGGACTCGTTGGAGACAACTCATCATGGTGCACGTGAATGTCCCTCTCCTAGGGACAGAATTCGTAGGTTATTTTCGGATGAGCCTGTTTGGGATGATGGGGATGAATGGGTCACGGTGAGAAGCAATGAGGTCCCTTTGGAGGGGTTGTCCCTTTCCAAAACGGACACTTTTTCCTACATGGTTTGTGATGAGACTGGTTTGGTGACTTTTTGTGAACCTAACATTGTAGTTGCAACTGTTATTGAATTGAGTAGATGGAATTGGAATGCTATTAGTGAAGATGATTGTTATCTTAGAGGCACCTACTGTGTCTGTCGCAGCAGGGAATCATTATCAGTTTTTAGTAAGGAGATCCCCACTTTATCCAACATAGGAAAAGTCACCCACCCTTAG 1212 0.5347 MEWTRGHTLGRGSTAAVYMAESRQSGQVFAVKSAELHRSEFLKREERILSMLKCPQIVAYQGCDVTLENGVRWFNVFMEYAPHGTLAERGGCMEEAVVGFYTRQILQGLNYLHENGIVHCDLKGQNVLVTEKGVKIADLGCARRVGEEFVIAGTPAFMAPEVARGEQQGFPADVWALGCTVLEMITGKAPWHGGGDPAAVVYRIGFSGEVPEIPSFMSEQGRDFLGKCLKREASERWSVEELLGHGFVKECTELNLLLLDSDTPTCVLERGFWDSLETTHHGARECPSPRDRIRRLFSDEPVWDDGDEWVTVRSNEVPLEGLSLSKTDTFSYMVCDETGLVTFCEPNIVVATVIELSRWNWNAISEDDCYLRGTYCVCRSRESLSVFSKEIPTLSNIGKVTHP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02073 403 CDD STKc_MAPKKK 2 248 - -
Cca08g02073 403 PANTHER MAP KINASE KINASE KINASE 1 333 - -
Cca08g02073 403 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Cca08g02073 403 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02073 403 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02073 403 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cca08g02073 403 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 333 - -
Cca08g02073 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Cca08g02073 403 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Cca08g02073 403 Pfam Protein kinase domain 4 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02073 Cca-Chr8 53715191 53718597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02073 1 276 MAP Kinase Kinase Kinase AT2G32510 52.759 4.67e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca08g02073 Pkinase 3.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02073 K20716 - gmx:100802174 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02073 08 53715191 53718597 Cca08g02073 08 53715191 53718597 ECH
Cca04g01001 04 10883991 10885467 Cca08g02073 08 53715191 53718597 ECH
Cca10g00700 10 7843439 7844681 Cca08g02073 08 53715191 53718597 ECH