Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02072 ATGGGAAACATGTTCAACGTGGTTGCGTTCTGTTTCTGTTTGTGGACTCTGTTGTTTTCTCTGGTGTTCTGTGCACCCAGCGATGGGTTGCCCAGGATTGGACTGAAAAAGATCAAATTGGACATCAATGATGAGGGTATGGAGTTTAAGGATTCAGGGTCTTCAATTAGAAAGTATCATCTCCAGAACATCCTCGGAGGTGCTGAGGATACCGATGTTGTTGCGCTGAAGAATTACTTGGATGCTCAATACTATGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACCGGAAGCTCTAACACGTGGGTGCCATCATCCAGATGTATCTTCTCGCTTGCATGTTTAACGCATGTAAGGTACAGGTCTAGCCAATCCAGCACCTACAGGGAAAATGGTACTTCTGCTGCAATTCAATATGGTAGTGGAGCAATTTCTGGTTTTTTTAGCTATGATGATGTCAAAGTTGGTGACATAGTTGTGAAGAACCAGGAATTTATAGAAGCAACTAGAGAACCTGGAACTACATTTGTGACGGCTAAGTTCGATGGTTTACTAGGACTTGGATTTCAAGAAATATCAGTTGGAAATGCTGTTCCAGTGTGGTACAATATGATTGAACAAGGTCTTGTACGAGATCCAGTATTTTCATTTTGGCTCAATCGTAATCCAGAAGAAGAGAATGGGGGTGAGATTGTTTTCGGTGGTGTTGATCCTGCTCACTACAAGGGCGAACATACTTATGTACCTGTGACACGAAAAGGATATTGGCAGTTTGACATGGGAGATGTGCTTATTGCTGGTAAACCCACAGGATACTGTGCTAATGACTGCTCAGCAATTGCAGACTCTGGAACTTCTTTGTTGGCAGGTCCAACGACCGTAATTACTATGATAAATCAAGCAATTGGAGCATCTGGGGTTGTAAGCAAAGAATGCAAATCTGTTGTGGAACAATATGGACAGACAATCTTGGAATTGCTCTTGGCTGAAGCAAAGCCAAAAAAGATTTGCTCACAAATTGGATTGTGCACCTTTGATGGGACTCGTGGTGTTAACATGGGTATTGAGAGTGTGGTAGATAAGAATGAAAGAAAATCATTCGATGGCGTTCGGGGTGCTACTTGTTCAGCATGTGAGATGGCTGTTATCTGGATGCAGAACCAGCTGAGGCAGAATCAAACGGAAAATCGGATAATAGACTATGCCAATGAGCTTTGTGATAAATTGCCTAACCCTTTGGGTCAATCACTCGTTGACTGTGGAAAGATCCCTTCAATGCCTATTATTTCCTTCACTATTGGTGGAAAAGTTTTTGACCTTGCCCCAAAGGAGTATATACTGAAGGTGGGCGATGGCGCTCAAGCCCAATGCATCAGTGGCTTTATTCCATTGGATGTTCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATGTCTTCATGGGGCGCTATCACACCATCTTTGATTATGGTAAACTAAGAGTCGGATTTGCTGAAGCAGCGTAA 1527 0.4342 MGNMFNVVAFCFCLWTLLFSLVFCAPSDGLPRIGLKKIKLDINDEGMEFKDSGSSIRKYHLQNILGGAEDTDVVALKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNTWVPSSRCIFSLACLTHVRYRSSQSSTYRENGTSAAIQYGSGAISGFFSYDDVKVGDIVVKNQEFIEATREPGTTFVTAKFDGLLGLGFQEISVGNAVPVWYNMIEQGLVRDPVFSFWLNRNPEEENGGEIVFGGVDPAHYKGEHTYVPVTRKGYWQFDMGDVLIAGKPTGYCANDCSAIADSGTSLLAGPTTVITMINQAIGASGVVSKECKSVVEQYGQTILELLLAEAKPKKICSQIGLCTFDGTRGVNMGIESVVDKNERKSFDGVRGATCSACEMAVIWMQNQLRQNQTENRIIDYANELCDKLPNPLGQSLVDCGKIPSMPIISFTIGGKVFDLAPKEYILKVGDGAQAQCISGFIPLDVPPPRGPLWILGDVFMGRYHTIFDYGKLRVGFAEAA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02072 508 SMART sapb_4 278 350 IPR008139 -
Cca08g02072 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Cca08g02072 508 Gene3D Acid Proteases 32 242 IPR021109 -
Cca08g02072 508 Gene3D - 314 417 - -
Cca08g02072 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629
Cca08g02072 508 Pfam Saposin-like type B, region 2 317 350 IPR008138 -
Cca08g02072 508 Gene3D Acid Proteases 243 508 IPR021109 -
Cca08g02072 508 CDD phytepsin 74 506 IPR033869 GO:0004190
Cca08g02072 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Cca08g02072 508 ProSiteProfiles Peptidase family A1 domain profile. 84 505 IPR033121 -
Cca08g02072 508 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Cca08g02072 508 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Cca08g02072 508 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190|GO:0006508
Cca08g02072 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Cca08g02072 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190|GO:0006508
Cca08g02072 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 508 IPR001461 GO:0004190|GO:0006508
Cca08g02072 508 SUPERFAMILY Acid proteases 12 507 IPR021109 -
Cca08g02072 508 SUPERFAMILY Saposin 315 417 IPR011001 -
Cca08g02072 508 Pfam Eukaryotic aspartyl protease 83 507 IPR033121 -
Cca08g02072 508 ProSiteProfiles Saposin B type domain profile. 314 354 IPR008139 -
Cca08g02072 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02072 Cca-Chr8 53701755 53706613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02072 K08245 - gmx:547943 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02072 08 53701755 53706613 Cca08g02072 08 53701755 53706613 ECH
Cca11g02934 11 56622390 56634532 Cca08g02072 08 53701755 53706613 PCT