Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02071 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCTTCTCAATCTCTCCCCTTGTTTCCTTCCAAACAGCCTCCCAACGATACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGCGCCGCCAACAAGGAAGACGATCACAACCGCAAAGTTGTCGGTGAAGTCGACTTCTTCTCTGACAGAAACAAGCCAAACGTTAAACCCAACATCATCAAGAAGGAGAATATTGATGAAAAACCTCTCCACGTTAATGTTAATACTGGTTTGCAACTCCTTACTGCTAACACCGGGAGTGATCAATCTACCGTGGATGATGGGGTCTCATCCGATGCCGAAGATAAGCGAGTCAAATCCACTGAGCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCAGAGAACAAGAAGCTCAAAGAGATGCTCAGCCATGTCACTGGTAACTACACCGCCTTGCAGATGCATCTTATGACATTAATGCAACAGAACCAGCGCACAGAGACCACGGAAAATGAGGTTGTTCAGGGAAAGGTGGAGGATAAAAACCATGGTGTTGGTGGAGGGAAGGTACCGAGGCAGTTTCTTGATATAGGTCCCAGTGGCACAGCCGAAGTGGATGATCAAGTATCAGATTCTTCTTCTGATGAAAGAACACGATCGAGCACACCTCAGAACAATAACGTTGAAGGTGGAACAAGAGATGGCGTGAAAAATAGTAATGGTAAACACGAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGGCTCCCAATAAACTTCAGAAAACGAACCCTTCCACTGCCATGGATCAATCCACCACAGAAGCCACAATGAGAAAAGCTCGCGTCTCAGTTCGTGCCCGCTCAGAAGCTCCCATGATAAGTGATGGGTGCCAGTGGAGAAAATATGGACAAAAAATGGCCAAGGGAAATCCATGTCCTCGGGCATATTACAGGTGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTGACAACATATGAGGGGACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTTCAGCTGCTGCTAGCATGTTGTTGTCAGGGTCAATGTCCAGTGCTGAGGGGATAATGAACCCCAATTTGCTAGCCAGAGCAATTCTTCCTTGCTCTTCTAGCATGGCCACACTTTCTGCATCAGCACCATTCCCCACTGTGACTTTGGACCTCACACACAACCAAAACCCATTGCAGTTTCAAAGACCTTCTGCCCCATTTCAATTGCCCTTCCTCCAAGGGCAGCCCCAGAATTTCGGGTCCGGAGCCACCCCAATTGCACAAGCACTTTATAACCAGTCAAAATTCTCTGGTCTTCAGTTATCTCAGGAAGTGGGATCTTCCCAATTAGCCCCACAAGCTCCTAGACCACCCTTACAACCAACCCAACAACCACCCTCGCTGGCTGACACAGTCAGcgccgccaccgcagccatcaccgccgaccccaacttcaccgccgtgctcgccgccgccATCTCCTCCATCATCGGTGGTGCTCATGCGaacaacaacaccaacaccaacaccaacaacaacacAAGCAGGACTAGCTAG 1650 0.4594 MDKGWGLTLDTSSSQSLPLFPSKQPPNDTMFPLLGFPVNLSRAANKEDDHNRKVVGEVDFFSDRNKPNVKPNIIKKENIDEKPLHVNVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRVKSTELAQLQVELQRMNAENKKLKEMLSHVTGNYTALQMHLMTLMQQNQRTETTENEVVQGKVEDKNHGVGGGKVPRQFLDIGPSGTAEVDDQVSDSSSDERTRSSTPQNNNVEGGTRDGVKNSNGKHELGREESPDSESQGWAPNKLQKTNPSTAMDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSAEGIMNPNLLARAILPCSSSMATLSASAPFPTVTLDLTHNQNPLQFQRPSAPFQLPFLQGQPQNFGSGATPIAQALYNQSKFSGLQLSQEVGSSQLAPQAPRPPLQPTQQPPSLADTVSAATAAITADPNFTAVLAAAISSIIGGAHANNNTNTNTNNNTSRTS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02071 549 MobiDBLite consensus disorder prediction 239 254 - -
Cca08g02071 549 MobiDBLite consensus disorder prediction 166 284 - -
Cca08g02071 549 PANTHER WRKY TRANSCRIPTION FACTOR 6 27 541 - -
Cca08g02071 549 MobiDBLite consensus disorder prediction 99 119 - -
Cca08g02071 549 MobiDBLite consensus disorder prediction 218 237 - -
Cca08g02071 549 ProSiteProfiles WRKY domain profile. 295 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g02071 549 Coils Coil 117 151 - -
Cca08g02071 549 MobiDBLite consensus disorder prediction 7 23 - -
Cca08g02071 549 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g02071 549 Gene3D WRKY domain 285 362 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g02071 549 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g02071 549 MobiDBLite consensus disorder prediction 175 189 - -
Cca08g02071 549 SUPERFAMILY WRKY DNA-binding domain 293 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g02071 549 MobiDBLite consensus disorder prediction 257 284 - -
Cca08g02071 549 SMART WRKY_cls 300 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g02071 549 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 541 IPR044810 GO:0003700
Cca08g02071 549 MobiDBLite consensus disorder prediction 476 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02071 Cca-Chr8 53686395 53689032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02071 1 542 WRKY Transcription Factor Family AT1G62300 51.827 3.41e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g02071 WRKY 6.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02071 - - ccaj:109803638 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02071 08 53686395 53689032 Cca08g02071 08 53686395 53689032 ECH
Cca04g01000 04 10871778 10874870 Cca08g02071 08 53686395 53689032 ECH
Cca10g00698 10 7821026 7823799 Cca08g02071 08 53686395 53689032 ECH