Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02068 ATGGCCACCTCTCCCTCACTCCTCTTCCTTTCATGCTTCATACTACACCTTGCTTCTACCCGCATCAATGCCTATTCAAAAGAGAGTGTTGTCCTAAATAAGATAGACTCATGCTGGCGGGCCAAGTCAAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCAATAGGCTTTGGCAATGATGCTATAGGGGGCAAGTATGGAGCCATATATAAAGTCACAGATCCCTCTGATGACCCTATAAGCCCAAAACCTGGCACACTTCGTTATGGTGTGATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTTATTAGGCTCAACAATGAGCTTATAATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTTGAGATAGGAAATGGGCCATGCATTACTATACAAGGTGTTAGCCATGTCATCATACATGGCATTAGCATCCATGATTGTGAACCAAGCAAGGCTGGCCTTGTGAGGAGTACACCATCTCATGTTGGCCATCGTCTAGGCTCTGATGGGGATGGCATTAGTGTCTTTGCCTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGATGTTATTCATGCCTCAACTGCTATTACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTTATGCTACTAGGGCACAGTGACGAATATACAGAAGATAAAATAATGAAAGTAACAATAGTCTTCAACCGATTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTTGTAAACAACAAATATGATGGGTGGAAAATGTATGCCATCGGTGGCAGTTCTAACCCAACCATTTTAAGTGAAGGAAACTACTACATAGCTCCAAATAACCCTGCTGCAAAACAGATTACCAAGAGGGAAAAGAAGGGAAAATTGACGAATTGGAAATGGAGATCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCTGGGTATGGAAGTTGTGCTCCAAATTATTCACCCTCTCAATTTTTTACTGCTACACCTGCTTCCCTGGTGCCGGCAATAACTCTCAATGCAGGTCCCCTGACTTGTGTTGTTGGTAAAGCGTGTTAG 1140 0.4281 MATSPSLLFLSCFILHLASTRINAYSKESVVLNKIDSCWRAKSNWASNRQALADCAIGFGNDAIGGKYGAIYKVTDPSDDPISPKPGTLRYGVIQTQPLWIIFAKDMVIRLNNELIMNSYKTIDGRGAKVEIGNGPCITIQGVSHVIIHGISIHDCEPSKAGLVRSTPSHVGHRLGSDGDGISVFASSNVWIDHCFLARCADGLIDVIHASTAITISNNYFTQHDKVMLLGHSDEYTEDKIMKVTIVFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYIAPNNPAAKQITKREKKGKLTNWKWRSSKDAFLNGAYFVPSGYGSCAPNYSPSQFFTATPASLVPAITLNAGPLTCVVGKAC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02068 379 PANTHER PECTATE LYASE 2 378 - -
Cca08g02068 379 SUPERFAMILY Pectin lyase-like 33 370 IPR011050 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Cca08g02068 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Cca08g02068 379 Gene3D - 32 372 IPR012334 -
Cca08g02068 379 SMART amb_all 106 303 IPR002022 -
Cca08g02068 379 PANTHER PECTATE LYASE 18-RELATED 2 378 IPR045032 GO:0030570
Cca08g02068 379 Pfam Pectate lyase 116 297 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02068 Cca-Chr8 53655411 53656938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02068 6 379 Polysaccharide Lyase AT1G11920 66.400 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02068 K01728 - gmx:100799106 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02068 08 53655411 53656938 Cca08g02068 08 53655411 53656938 ECH