Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02067 ATGGCCACTTTAACCACTCTCCTAGTGCTGATCTCATGCTTTCTAGTACCCACCTTGGCTTTAACACCGAATAGAGATTCAACAAAGGAGTTCAAATCCCTCTATCCAATCCCAAGCTACATCACCAAGAGCCCCAATAATGTTATCATAAACACAATAGACTCATGTTGGCGAGCAAAAACAAATTGGGCTTCTAACCGCCAATCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCCTAGGAGGAAAGTTTGGAGATATATACCAAGTCACTGACCCCTCTGATGACCCTATAAACCCAAAACCTGGCACACTCCGCTATGGTGCAATCCAAACACAACCCCTTTGGATAACTTTCTCCAACGACATGGTTATAACGCTGAAGAACGAGCTCATGGTGAATAGCTACAAGACCTTTGATGGAAGAGGTGCCAACGTGGAGATTGCAAATGGTCCTTGCATTACCATACAAGGTGTTAGCCATGTCATCATACATGGAATTAGCATTCATGATTGTAAACCGGGTAAGGGTGGAATGGTGAGAAGCACTCCTGAGCATGTTGGGTATCGTGAAGGGTGTGATGGAGATGGCATTAGCATATTTGCATCCTCTAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCTGTCACCATCTCTAACAACTACTTCACCCAGCATGACAAAGTGATGCTTCTAGGACACAGCGATGAATACAGCGCAGATAGAATAATGAGAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCTTAATAGAAAGAATGCCAAGAGTAAGGTTTGGTTATGCCCATGTGGTGAACAACCGCTATGAGGAGTGGCTCATGTATGCCATTGGTGGCAGCGCCAACCCTACCATTCTTAGTGAAGGCAACTATTTTATGGCTTCAGATGATCCTGTTGCAAAACAGGTCACGAAGAGGGAAAGTAGTGAACAGTGGAATAATTGGAAATGGAGGAGTTTTGGGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCAGGGTATGGAAGTTGCACTCCATTATATTCACCTGCTCAAACTTTTGTCGCGGCCCAGGCATCCATGGTGCCCTTGTTAACTCTCAATGCAGGGCCACTCAATTGTGTTGTTGACAAAGCTTGTTAA 1194 0.4456 MATLTTLLVLISCFLVPTLALTPNRDSTKEFKSLYPIPSYITKSPNNVIINTIDSCWRAKTNWASNRQSLADCAIGFGKDALGGKFGDIYQVTDPSDDPINPKPGTLRYGAIQTQPLWITFSNDMVITLKNELMVNSYKTFDGRGANVEIANGPCITIQGVSHVIIHGISIHDCKPGKGGMVRSTPEHVGYREGCDGDGISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHSDEYSADRIMRVTVAFNRFASGLIERMPRVRFGYAHVVNNRYEEWLMYAIGGSANPTILSEGNYFMASDDPVAKQVTKRESSEQWNNWKWRSFGDEFLNGAYFVPSGYGSCTPLYSPAQTFVAAQASMVPLLTLNAGPLNCVVDKAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02067 397 SMART amb_all 124 321 IPR002022 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Cca08g02067 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Cca08g02067 397 Gene3D - 50 390 IPR012334 -
Cca08g02067 397 Pfam Pectate lyase 130 315 IPR002022 -
Cca08g02067 397 PANTHER PECTATE LYASE 18-RELATED 43 396 IPR045032 GO:0030570
Cca08g02067 397 SUPERFAMILY Pectin lyase-like 51 388 IPR011050 -
Cca08g02067 397 PANTHER PECTATE LYASE 43 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02067 Cca-Chr8 53649438 53651324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02067 47 397 Polysaccharide Lyase AT1G11920 71.307 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02067 K01728 - gmx:100803229 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02936 11 56656420 56658588 Cca08g02067 08 53649438 53651324 PCT