Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02060 ATGAAAATTTCTTTTCAAAGACGAGAAAAATCAAACCAACAGACTGAAGATAAGTTAGAGTTCCTAAGGTTCTCAAGATCCGTTGGAATTCGAAAGAGACAAAATGGCGAATGTGGTTTTAAAAATCCAAACTCAGGAGAAAAAACCACACTGTCCTATGTAAAGAACAGTACTGCCCTAGGAGAAAGGTCAAACCAATATGTTGACTATACAGGCAACATCCCAAGATCCTTAAGAGATTCCGGAATTTCAAAGAAGAGAAAGGTTCAGGATATTCATAAACAAGATATTATAAAATCAAAGTCAAAAAAGGACGAAGGCTTTATGGTTTGTTGTTCAAAGAGGACTTGTAAAGGACGAGAGCCAAAGAAGTGTCTTTCTTCATTGAAGAAAAGAAAATTTGAAGACGATATCTCGATTAACAGTTTGGAAGATGAAACAGATTTTGTTCCTTCAGAGACAAATTCCAAAAGCAAAGCTAGAAAATTGGATAATGTGAAGAATGCCGGGCACACTTCCAAAATATGTCATCAATGCAGGAAGAAGGAAAGGACAGCATACGTACCTTGTACTAAATGTCAGAAAATGTACTGTGTGTGGTGCATCCGGAAATGGTATCCCAATATGTCAGCAGAAGATATTGCAGAAGAGTGTCCCTTTTGCCAAAAGAATTGCAATTGCAATTTTTGCTTGCGTTCAAGAGGAATGATTAAGACCTCTAACAGAAGCATCACAGATGGCGAAAAGGTTCAATATCTCCAATATATAATTAACTTGCTCCTTCCATTTATGCAACAAATTCATGAAGAACAAAGTCAAGAGCAAGATATTGATGCTAAAATACAAGGTATTAAGCTTCAGCTTCGTAGCTTTTTTATATACAACTTTGAAGACATCACTGACAATAACCTCTTGCCAGGAAAATCATCTTCTGAGATTGAGATACCACGAACTTCTTGTGCTGAAAATGAACGTATCTATTGTGACCATTGTGCTACTTCAATAACTGACCTTCATAGAAGCTGTCCCAATTGTTCCTTAGAAATCTGCCTTAATTGTTGCAAAGAAATACGCAATGGAAGTATAACACCCCGGTCTGAACTGAAGTTTCAATATGTGAATAGGGGATATGATTATATGCATGGTGGAGATCCTTTATCAGTGTCTCCTGATTTAAGAACTTCAAAAGGTCATGATGAGATATTTACCAAATGGAATGCCAACAGTGATGGAAGTATTAGATGTGCTCCAAAAAATATGGGGGGCTGTGGTGGCTGTGTGTTGGAGCTGAAACGCATGCTTCCAAATGGGTGGATATCAGACTTGGAAGCCAAAGCTCGAAACATGCTAAATTTTATTTGCAAAACTGAACAAACAACTCTTCAGAAAGAAGCAATATCAAGTTGCAATTCTACGATAAGAGCAGCTTTTAGAGATAGCACAAATGATAATAATATATACTGTCCATTGTCTAGTGACCTCATAGATGGAGGACTATTTCTCTTCCAAAAACATTGGACCAAGGGTGAACCAATCATAGTTCGTGATGTTCTTAAACAGGGGACAGGTCTAAGTTGGGAGCCAACAGTCACATGGCGAGCATTATGTGAAAATGTGGTTTCGGGGATCAGCCCAAATATGTCACATGTGAAGGCCATCGATTGCCTGGCTAGTTGTGAGGTAGAAATCAACACTCGTACGTTCTTTACAGGTTATACGCAAGGAAGAATGTATGGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCACCCTCTGACAAGTTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTCATTCGGTGCTTGCCATTTCAAGAGTATAGTGATCCTCGAGCTGGGATCCTCAACCTAGCTGTAAGGTTGCCACCCCATGTCATAAAGCCAGATTTGGGTCCAAAAACCTATATTGCTTATGGGATTAAAGAAGAACTTGGCAGAGGGGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATCTTGACTCACACAGCTGAGGTAACATTAACTGATGAACAGAACTCTGTTATCTCAAAACTGAAAAAAGCACACAAGGCCCAGGATGAGAAAGAGGGTCGTGCTCAAGATAGAGTTGCTGAATGCCTTAATGGAGGAAAGGTCTTCCCAAATGATATGACCGCTATATCTGAAGAAACAGGTGGTGCTCTTTGGGACATATTTCGGAGAGAGGACACCGATAAGTTAGAATCATATCTAAGAAAACATTGCAAAGAATTTAGGCATACTTTTTGTTCTCCAGTTGAACAGGTTGTCCATCCAATTCATGACCAATGTTTTTACTTGACTTCGGAACACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAAGCTTGGACTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCGGGATGCCCGCATCAAGTCAGAAATCTCAAGTCATGCACCAAAGTTGCTGCAGATTTTGTGTCCCCAGAAAATGTTCATATGTGCTTGCACTTAACTAACGAGTTTCGTAGTCTTCCTAAGAATCACAGGGCCAGAGAAGATAAGCTTGAGATAAAGAAGATGATAATCTATGCTGTTGACCACGCTGTCAAAGAATTAGAAGCTTTAGTTAAATGTTCTTGA 2658 0.3943 MKISFQRREKSNQQTEDKLEFLRFSRSVGIRKRQNGECGFKNPNSGEKTTLSYVKNSTALGERSNQYVDYTGNIPRSLRDSGISKKRKVQDIHKQDIIKSKSKKDEGFMVCCSKRTCKGREPKKCLSSLKKRKFEDDISINSLEDETDFVPSETNSKSKARKLDNVKNAGHTSKICHQCRKKERTAYVPCTKCQKMYCVWCIRKWYPNMSAEDIAEECPFCQKNCNCNFCLRSRGMIKTSNRSITDGEKVQYLQYIINLLLPFMQQIHEEQSQEQDIDAKIQGIKLQLRSFFIYNFEDITDNNLLPGKSSSEIEIPRTSCAENERIYCDHCATSITDLHRSCPNCSLEICLNCCKEIRNGSITPRSELKFQYVNRGYDYMHGGDPLSVSPDLRTSKGHDEIFTKWNANSDGSIRCAPKNMGGCGGCVLELKRMLPNGWISDLEAKARNMLNFICKTEQTTLQKEAISSCNSTIRAAFRDSTNDNNIYCPLSSDLIDGGLFLFQKHWTKGEPIIVRDVLKQGTGLSWEPTVTWRALCENVVSGISPNMSHVKAIDCLASCEVEINTRTFFTGYTQGRMYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRAGILNLAVRLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLTDEQNSVISKLKKAHKAQDEKEGRAQDRVAECLNGGKVFPNDMTAISEETGGALWDIFRREDTDKLESYLRKHCKEFRHTFCSPVEQVVHPIHDQCFYLTSEHKKKLKEEFGVEAWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHMCLHLTNEFRSLPKNHRAREDKLEIKKMIIYAVDHAVKELEALVKCS 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02060 885 CDD cupin_RmlC-like 772 820 - -
Cca08g02060 885 Gene3D Cupin 481 857 - -
Cca08g02060 885 Pfam JmjC domain, hydroxylase 735 831 IPR003347 -
Cca08g02060 885 SMART cupin_9 601 848 IPR003347 -
Cca08g02060 885 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 172 241 IPR018866 -
Cca08g02060 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 305 884 IPR045109 GO:0032454|GO:0033169
Cca08g02060 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 28 284 IPR045109 GO:0032454|GO:0033169
Cca08g02060 885 ProSiteProfiles JmjC domain profile. 620 848 IPR003347 -
Cca08g02060 885 ProSiteProfiles Zinc finger RING-type profile. 176 222 IPR001841 -
Cca08g02060 885 SUPERFAMILY Clavaminate synthase-like 503 883 - -
Cca08g02060 885 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 305 884 - -
Cca08g02060 885 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 28 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02060 Cca-Chr8 53600094 53604013 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca08g02060 JmjC 1.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02060 K15601 K21989 gmx:100801772 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02060 08 53600094 53604013 Cca08g02060 08 53600094 53604013 ECH
Cca11g02940 11 56693840 56699320 Cca08g02060 08 53600094 53604013 PCT