Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02059 ATGAGCACAGCCCATGTTTTTGTTATGTTTGAGTTAATGATTATTATTATTACAAGAGTGGAAGGTAGATGCTTCAGTGGCTGCAGCCTTGCTCTAGCTTCCTATTACATACGAGAAGGCATAGACCTGACTTACATTAGCAACCTCTTCGGAAGGCCCACATCGGAGATTATGAAGTACAACCCAAACGTGACAAACCCTGACCAGATTAGCAGCGAAACGCGGATAAAAGTGCCGTTTTCGTGTGATTGCTTGAACGGTGAATTTTTGGGGCACACTTTCTCGTACGCAACCCAACATGGCGACACATACAAGATAATTGCCAAGGATGATTTCTCGAACCTCACGAGCCAGGATTGGGTGAGCAGGGTCAACAACTACCCACCCAATGATATACCCGCAAGCGTCAACATCAATGTCACCGTTAACTGCTCCTGCGGAAACCCACACGTGTCCAAGGATTATGGCCTTTTCATCACGTACCCGCTTCGCCTCGGTGACGACTTGCAAGGGCTGGCGGCAGAATCCGGTGTGCCGGCGGAGCTCCTGCTACGCTACAACCCCAACTCGGATTTCAGTGCCGGGCATGGACTTGTGTTTCTGCCGGCCAAAGATGAAAATGGAAGCTTTCCACCAATGCAGCTGGGATCATCAGGAATGTCTAGTGGAGCCATTGCTGGCGTAGCTGTTGGAGGAGCTGCTGGGATCTTAATTTTGGCACTTCTTATATATGTTGGACTAAACAGAAGAAGGAAAGTGGCTGAGGCACCCCTTCTCCCACTCCCAGGAGCATCTGGAGATCACTGTAGTCCACTCAATCATGGTATTGGTATTGGAAGCAGCTTGGACAAGACATCAGAATCTTCTGCTGTTGCTTCTCCAAGGTTGACAGGGATAACAGTGGATAAGTCAGTGGAGTTCTCATATGAGGAGCTAGCCAAGGCTACTGATGGCTTTAGCGTGGGTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCTGCTATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCTGAACTAAAGGTTCTTACACACGTCCATCACTTGAACTTGGTGCGGCTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGTCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGCAGCTAGAGTTCAAATTGCCCTTGATGCAGCAAGAGGACTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCACAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTCGCAAAGTTGACTGAGTACGGTAGTTCTTCATTGCAAACGCGTCTTGTGGGTACATTTGGTTATATGCCTCCGGAATATGCACAATATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTCGGAGTTGTTCTCTATGAACTCATATCAGGCAAGGAAGCTATCGTCAAGACAAACGAATCTGAGAATGACTCAAAAGGATTAGTTGCCTTGTTTGAAGAAGTTCCTGGCCTGCCAGACTCAAAAGAAGATCTTCGTCAACTTGTTGACCCTAGACTTGGTGACAACTACCCTCTTGACTCAGTACTTAAGGTGTCTCAGCTTGCTAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCTTCAACTGAGGATTGGGATGTTGGCTCCTTTTATGAAAACCAAGCTCTAGTGCACCTAATGTCTGGAAGGTag 1854 0.4531 MSTAHVFVMFELMIIIITRVEGRCFSGCSLALASYYIREGIDLTYISNLFGRPTSEIMKYNPNVTNPDQISSETRIKVPFSCDCLNGEFLGHTFSYATQHGDTYKIIAKDDFSNLTSQDWVSRVNNYPPNDIPASVNINVTVNCSCGNPHVSKDYGLFITYPLRLGDDLQGLAAESGVPAELLLRYNPNSDFSAGHGLVFLPAKDENGSFPPMQLGSSGMSSGAIAGVAVGGAAGILILALLIYVGLNRRRKVAEAPLLPLPGASGDHCSPLNHGIGIGSSLDKTSESSAVASPRLTGITVDKSVEFSYEELAKATDGFSVGNIIGQGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWAARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLAKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELISGKEAIVKTNESENDSKGLVALFEEVPGLPDSKEDLRQLVDPRLGDNYPLDSVLKVSQLAKACTHENPQLRPSMRSIVVALMTLSSSTEDWDVGSFYENQALVHLMSGR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02059 617 SMART serkin_6 319 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02059 617 ProSiteProfiles Protein kinase domain profile. 319 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02059 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 617 IPR044812 GO:0019199|GO:0045087
Cca08g02059 617 Pfam Protein tyrosine and serine/threonine kinase 321 588 IPR001245 GO:0004672|GO:0006468
Cca08g02059 617 Gene3D LysM domain 29 84 IPR036779 -
Cca08g02059 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Cca08g02059 617 Gene3D Transferase(Phosphotransferase) domain 1 390 601 - -
Cca08g02059 617 CDD STKc_IRAK 325 586 - -
Cca08g02059 617 SUPERFAMILY Protein kinase-like (PK-like) 299 589 IPR011009 -
Cca08g02059 617 ProSiteProfiles LysM domain profile. 33 78 IPR018392 -
Cca08g02059 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 5 617 - -
Cca08g02059 617 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Cca08g02059 617 Gene3D Phosphorylase Kinase; domain 1 300 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02059 Cca-Chr8 53580627 53592740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02059 12 617 Receptor kinase-like Gene Family AT3G21630 55.195 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca08g02059 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02059 - K13429 gmx:100802308 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02059 08 53580627 53592740 Cca08g02059 08 53580627 53592740 ECH