Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02056 ATGGCGCCTGCCCGTTTCCCTCTTTCACTCTTTCTCACTTTGATCTTCTTCGTTGCTCTTCCTCAAGCCATCGCCAACACTGACCCATCTGATGTTCAAGCTCTTGAGGTGATGTACAATGCGTTGAATAGTCCAACTCAGCTAACGGGTTGGAGAATCGGTGGTGGTGATCCGTGTAGAGAGTCGTGGAAAGGGGTAACGTGTGAGGGTTCAGCCGTTGTTTCCATTGATCTCTCAGGTTTAGGACTCGATGGGACTTTGGGATACCTGCTTTCAGACCTTATGTCACTCAGAAACCTTGACTTAAGTGACAACAAGATCCATGATACAATTCCCTATCAGTTGCCGCCAAATCTTACTAGCCTGAATCTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTGAATTTAAGCAATAATGTGCTCTCCATGACTGTTGGCGATGTTTTTGCTGGTCTTTCAGATCTTGCTACCCTGGATCTATCATTCAATAACTTATCAGGAGATCTTCCTCCTTCATTTGGTTCATTGTCCAATCTTTCTTCACTTTTCTTGCAGACGAACCAGTTGACTGGCTCTCTTAGTGTTCTTGTTGGCTTGCCTTTGGATACTTTAAATGTGGCAAACAACAATTTCAGTGGATGGATACCTCACGAGCTTAGTTCCATCCATAATTTCGTATATGATGGAAATTCTTTTGAGAACACTCCTGCTCGTCATCCGCCAGCATTTATTTCACCTTCTCCCAGTGGATCTCATAATAGTCATCATCATTCGGGATCTGGTTCACATAACAAAACACAAGCTTTTGATAATGAAAATTCTGATGGCCATAAGGGTTTGACAGCAGGAGCTGTCGTAGGCATTGTTTTAGGTTCAGTACTGGTGGCTGCTATTTTGCTGCTTGCACTTGTTTATTGTATCCGAAAGCAAAAGGGGAAGGAAAAGGGTGCAAGAAACTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAACGTAACTCCACAGATGCAAGAGCAGAGGGTGAAAAGTTCTGCTGTTGTTACAGATCTCAAGCCTCGTCCAGCAGAAAATGTAACAGTTGAGAGGGTACCTGTTAAAAGTGGATCTGTAAAGCAGATGAAGTCCCCTATAACTTCTACATCATACACAGTTGCTTCTCTCCAAAGTGCAACAAATAGCTTTAGTCAAGATTTTATAATTGGCGAAGGTTCTCTTGGCCGAGTTTACAAGGCTGATTTTCCAAATGGGAAGTTAATGGCTGTTAAGAAGATCGACAACTCAGCACTTTCATTACAGGAGGAAGACAATTTCCTTGAAGCTGTTTCAAATATGTCACGCTTGCGGCACCCAAACATTGTGACATTGGCTGGATATTGTGCAGAGCATGGCCAACGACTTCTAGTTTATGAGTATATAGCAAATGGAAATCTGCATGACGTGCTCCATTTTGCTGAAGATAGCAGCAAGGCTTTGTCTTGGAATGCCCGTGTTCGCATAGCACTTGGCACAGCCCGGGCTTTAGAGTACTTGCATGAAGTGTGTTTGCCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTCAATCCTCACCTATCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAGGTGTCAACTCAGATGGTGGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCCTTAtcaggagtatacactgtaaaaagtgatgtttacagctttggggtggttatgctggaactattgacaggtcggaagcCACTTGACAGTTCACGGGTTAGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCACGATATAGATGCCTTGGCCAGAATGGTTGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCTGAGGTGGTGCAAGCACTGGTTCGGTTAGTGCAAAGAGCAAGTGTGGTTAAACGACGACCCAGTGACGAATCTGGTTTTGGTCACAAGACCCCAGACCATGAGGCCATAGACACTTCATTTTAA 2142 0.4225 MAPARFPLSLFLTLIFFVALPQAIANTDPSDVQALEVMYNALNSPTQLTGWRIGGGDPCRESWKGVTCEGSAVVSIDLSGLGLDGTLGYLLSDLMSLRNLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSISAMVSLNYLNLSNNVLSMTVGDVFAGLSDLATLDLSFNNLSGDLPPSFGSLSNLSSLFLQTNQLTGSLSVLVGLPLDTLNVANNNFSGWIPHELSSIHNFVYDGNSFENTPARHPPAFISPSPSGSHNSHHHSGSGSHNKTQAFDNENSDGHKGLTAGAVVGIVLGSVLVAAILLLALVYCIRKQKGKEKGARNFSGSLPRGVINVTPQMQEQRVKSSAVVTDLKPRPAENVTVERVPVKSGSVKQMKSPITSTSYTVASLQSATNSFSQDFIIGEGSLGRVYKADFPNGKLMAVKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYEYIANGNLHDVLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALARMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHKTPDHEAIDTSF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02056 713 Gene3D Transferase(Phosphotransferase) domain 1 483 692 - -
Cca08g02056 713 SUPERFAMILY L domain-like 28 236 - -
Cca08g02056 713 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Cca08g02056 713 MobiDBLite consensus disorder prediction 249 286 - -
Cca08g02056 713 MobiDBLite consensus disorder prediction 693 713 - -
Cca08g02056 713 CDD STKc_IRAK 411 682 - -
Cca08g02056 713 SUPERFAMILY Protein kinase-like (PK-like) 383 679 IPR011009 -
Cca08g02056 713 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cca08g02056 713 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 25 709 - -
Cca08g02056 713 Pfam Protein kinase domain 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02056 713 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Cca08g02056 713 Gene3D Ribonuclease Inhibitor 28 290 IPR032675 -
Cca08g02056 713 PANTHER OS01G0253100 PROTEIN 25 709 IPR045271 GO:0004714|GO:0006468
Cca08g02056 713 MobiDBLite consensus disorder prediction 258 281 - -
Cca08g02056 713 ProSiteProfiles Protein kinase domain profile. 405 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02056 713 Gene3D Phosphorylase Kinase; domain 1 367 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02056 Cca-Chr8 53555389 53561602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02056 140 713 Strubbelig Receptor Gene Family AT4G22130 70.261 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca08g02056 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02056 - - gmx:100803711 1216.06