Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02053 ATGGAGGGTAGTAGTTCTAATGGCCCTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGCTCATCATCCaataaatcctaatcctagtaataatactaataataatgcaaatacaaaCTGTCTCTTCATTCCCAACTGCACTAACAGTGAAACTCATCCTTCTATCATGCTTGACAATAACCACAACAACACCACCGATGACAACAACACTGGGTTAGGGTACTATTTCATGGAGAGTGGTcaccaccaccaccaccgcaacaacAATGGGAGCTCCTCCTCTTCCTCTTCTGGGGTCAAGGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAGAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGCGCTTCAGCAGTGTCAATGGCAGGTGATGCAGCTGGATCAGGTTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTGCAATTTCTTCCTCAGACTATGCTTGTAACGAGGGTGGTGATAGGAATGGATCATCTGAAGAGGATGTTGATCTACACAACATAGATCCCCAGGCAGAGGACAGGGAATTGAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCCGAATCACAGAAGCTGGCACTAGCAGAGTCGACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCACCCACACTATTACATGGATAATGTTCTAAACAATCCCTTTCCCATGGATCTCTCCCACCACATGCTCTAG 1107 0.439 MEGSSSNGPSYLLAFGENSGGLCPMTMMPLVTSHHAAHHPINPNPSNNTNNNANTNCLFIPNCTNSETHPSIMLDNNHNNTTDDNNTGLGYYFMESGHHHHHRNNNGSSSSSSSGVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVSMAGDAAGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLAISSSDYACNEGGDRNGSSEEDVDLHNIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLNNPFPMDLSHHML 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02053 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 359 - -
Cca08g02053 368 SMART ELK_2 250 271 IPR005539 GO:0003677
Cca08g02053 368 Pfam KNOX1 domain 116 154 IPR005540 GO:0003677|GO:0005634
Cca08g02053 368 Pfam ELK domain 250 271 IPR005539 GO:0003677
Cca08g02053 368 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Cca08g02053 368 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Cca08g02053 368 Pfam KNOX2 domain 168 214 IPR005541 GO:0003677|GO:0005634
Cca08g02053 368 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Cca08g02053 368 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 1 359 - -
Cca08g02053 368 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
Cca08g02053 368 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Cca08g02053 368 SMART HOX_1 272 337 IPR001356 GO:0003677
Cca08g02053 368 MobiDBLite consensus disorder prediction 92 117 - -
Cca08g02053 368 CDD homeodomain 282 334 IPR001356 GO:0003677
Cca08g02053 368 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Cca08g02053 368 Gene3D - 275 337 - -
Cca08g02053 368 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02053 Cca-Chr8 53512394 53520560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02053 116 368 Homeobox Transcription Factor Family AT1G62360 81.298 6.00e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca08g02053 KNOX2 6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02053 - - gmx:100805837 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02944 11 56747749 56752313 Cca08g02053 08 53512394 53520560 PCT