Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02051 ATGGAGCGTTTGGCCAGGTCAGTTCGGGCGTGGCGTTGGCATCGCCGCTGTTCGTTTCCCTCTTTCCAAACCCTAGCTTCTCGCTCCTCACCTCCTTCTCCCTATCCCAAGTTTGCGTCTACTTCATCCGTGTTTGATGCTTCAAGTTCTAGTGTTTTTCGCGAGGGTTATTCGATGCTTCCGGTTGTCTTAGCTGGTATTTTCGGAACTGGTTTGGTGGAAGCGGCATATGCGGAAGACGGTGGCGTCGATGTCCAAGAAACTGCTAGGAAGGAACGCGAGCGAATTGAGGAGTTGCTCAGAAGTAGAGATGTTCAATATGGTTCTTATCCTCGCTTCACAGTGGCCGCCAAAGGCCAAAAGGTTAGTGTTAAGTTTCAAATTCCCCCTGGTTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCACATCTTGGAACGAAAGTTGAAAGCCATAGCGGTGGTTCAGACATGTTATTACGAGCTTGGGACAGCACAGTTGCTTGGCAACTAACCCTTACTCATCCATCCAAACAAAAAAATATTCAAGGGAACAAGACAGATATATACGAAGATGATAGAGATCTATGTATACTCATATTTCATTCTCTCATTGGCTCAGATAAAGCTGAAATTGAATTCATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCGTCTCTGCTTTACAATTAGCTGGAAATGAGTTGAGACAGAGAAACACCCTGGAAAGAAAACCGAGGGAAGAGGTTGAAATGGTCCCACCTGTAGATAAATCTATTTCTGAACTTGAGGGTATGGGAGTGAGAATTTATGGACTTAATGAATCCGCGGGTTTATCAAATGCTGGCGAGATATCATGGGACAACATTGCTGGTTATGAACCTCAAAAACGAGTAATAGAAGATACAGTACTGTTGGCTTTGCATAGTCCTGAAGTATATAATGATATTGCTCGAGGGACTCGTCATAAGTTTGAGTCAAACAGGCCTCGAGCTGTGCTATTCGAAGGTCCACCAGGTACAGGGAAAACTTCCTGTGCTCGTGTCATTGCCAATCAAGCGGGTGTCCCTTTGCTTTATGTACCACTTGAGGCAATAATGTCTGAATTCTACGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCTCTGGCGAACAGTCTTCCTAATGGTGCTATTATATTTTTGGATGAGATCGATTCTTTTGCTGCTGCTCGTGACAACGAAATGCATGAAGCTACGCGAAGAATATTGTCAGTGTTATTGCGACAGATAGATGGGTTTGAACAGGATAAGAAAGTAGTTGTCATTGCTGCCACAAACAGAAAGGAAGATCTTGATCCTGCATTAATTAGTCGGTTTGATAGTATGATCGCTTTTGGTTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCAACTGTCCAAAACCGAACTAGATGAACTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATTAGAGATATTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTTCCCAAGGATGGAGAAGAAGCACATCTTCCACCCTTGCAAGAATATATAATGTGCGCAACGAGTCGACAGGAGGCGCTGCGTAACGCTGCCGCAAACAGGGAGCTCCGAAGCTCTTACCGCCGCAGGATTCTAAGCGACTGA 1707 0.4417 MERLARSVRAWRWHRRCSFPSFQTLASRSSPPSPYPKFASTSSVFDASSSSVFREGYSMLPVVLAGIFGTGLVEAAYAEDGGVDVQETARKERERIEELLRSRDVQYGSYPRFTVAAKGQKVSVKFQIPPGCEVSQLIANLTAHLGTKVESHSGGSDMLLRAWDSTVAWQLTLTHPSKQKNIQGNKTDIYEDDRDLCILIFHSLIGSDKAEIEFIKQGNLSPEELDAFVSALQLAGNELRQRNTLERKPREEVEMVPPVDKSISELEGMGVRIYGLNESAGLSNAGEISWDNIAGYEPQKRVIEDTVLLALHSPEVYNDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANSLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKQLSKTELDELARVTEDMSGRDIRDICQQAERSWASKIIRGQVPKDGEEAHLPPLQEYIMCATSRQEALRNAAANRELRSSYRRRILSD 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02051 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 518 IPR027417 -
Cca08g02051 568 Pfam ATPase family associated with various cellular activities (AAA) 336 464 IPR003959 GO:0005524|GO:0016887
Cca08g02051 568 ProSitePatterns AAA-protein family signature. 437 456 IPR003960 GO:0005524|GO:0016887
Cca08g02051 568 Gene3D - 466 531 - -
Cca08g02051 568 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 40 551 - -
Cca08g02051 568 CDD AAA 329 465 - -
Cca08g02051 568 Gene3D - 287 465 IPR027417 -
Cca08g02051 568 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 40 551 - -
Cca08g02051 568 SMART AAA_5 332 467 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02051 Cca-Chr8 53473844 53481716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02051 332 532 Calmodulin-binding Proteins AT3G56690 35.885 1.61e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02051 - - gmx:100803362 942.569