Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02041 ATGAGTCAACTGGGTGCGGAGCTGCAGGAACCGCAGAGGGAACCGAGGACCATTCTGGGGCTCTTATCGGAACAAATGGAGGGAGGCACACGCAGGAGGCGCACCTTGAAGGAACGGTTCGGGTTCATGGGCATGGGTTGCTGCGGGGCCACATGGGGGTTCCGCTCTCACCATGACGCTCTCAGCCAGACGGAGAGAGAGCAGCAGCAGGAAAGGGATCCGGAGTGCGTGAGCCCGGGCATGAATCTGGCGGCCGCGTTAGCGGCGGAGAGGCAGCTCCGTGGGCCGCaggaggaggcggtgagggcgccgtggagggtgtcgctgatgaggctgctggaggaggcggaggcggaggcggagacggagcaggaacaggagaaggagaagggaggGGTTGCGGGGAATGATTCGGTGTGCTGCGTCTGCATGGGGAGGAAGAAAGGCGCGGCCTTCATCCCATGTGGCCACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTCAATCGAGGCTCCTGTCCCCTCTGCAATCGTTCCATCCTCGAGATTCTCCACATTTTCTAG 567 0.4956 MSQLGAELQEPQREPRTILGLLSEQMEGGTRRRRTLKERFGFMGMGCCGATWGFRSHHDALSQTEREQQQERDPECVSPGMNLAAALAAERQLRGPQEEAVRAPWRVSLMRLLEEAEAEAETEQEQEKEKGGVAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILHIF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02041 188 CDD RING-HC 140 177 - -
Cca08g02041 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 188 IPR013083 -
Cca08g02041 188 PANTHER OS01G0917900 PROTEIN 16 188 - -
Cca08g02041 188 Coils Coil 106 130 - -
Cca08g02041 188 ProSiteProfiles Zinc finger RING-type profile. 140 178 IPR001841 -
Cca08g02041 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 188 - -
Cca08g02041 188 Pfam Zinc finger, C3HC4 type (RING finger) 137 182 - -
Cca08g02041 188 SMART ring_2 140 177 IPR001841 -
Cca08g02041 188 SUPERFAMILY RING/U-box 139 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02041 Cca-Chr8 53336921 53338162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02041 18 188 C3H Transcription Factor Family AT4G22250 55.208 2.24e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02041 - - ccaj:109804319 355.14