Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02032 ATGGCGGGGTCATGTTTCCTCGGGCTTAGGCTAAGGAGGTCTAAGAGTAAGCCTTTACCAGAACCTTCATCTGCCTCCAAGACCCATTTGGAGATTGACGTGGATAACATGGGAAGGAAGAGATTTGATAGCATGGAATCGTGGTCCATGATATTGGACTCAATGGAGACATGGGAGGCTTCAAAGGAGGAGGAGCAAGAGGAATGGACTGCAGACTTGTCACAGCTGTTTATAGGTAACAAGTTTGCTTCCGGGGCTCATAGCCGAATCTACCGTGGAATCTACAAGCAGATAGCTGTTGCTGTGAAAATGGTGAGGATTCCATCAGAGGATGAGGAGAGAAAGGCCTTGCTAGAAATGCAATTTAACTCTGAAGTGGCTTTGCTTTCACGTCTCTTTCATCATAACATAGTGCAGTTTATTGCAGCATGTAAGAAACCGCCCGTGTATTGTATCATAACAGAATACATGTCACAAGGGACCCTGAGGATGTATCTGAATAAGAAAGAGCCATACTCACTCTCAATGGAAACAATTCTAAGGTTAGCTCTAGATATATCAAGGGGTATGGAGTACCTTCATTCACAAGGAGTTATTCACAGAGACCTGAAGTCAAGTAATTTGCTTCTCAACGATGATATGAGGGTCAAGGTGGCGGATTTTGGCACTTCTTGTCTTGAAACACGATGTCGGAAAAGCAAAGGGAATTCTGGAACATATCGTTGGATGGCACCAGAGATGGTTAAGGAAAAACCTTATACTCGTAAAGTTGATGTGTATAGTTTTGGTATTGTGCTTTGGGAGCTCACAACTGCTCTACTTCCATTCCAAGGGATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCTAGTTGTGAACCAGCACTAGCACATCTGATAAAGCGTTGCTGGTCAGCAAACCCCTCGAAAAGGCCAGATTTCAGTGATATTGTGTGCACTTTGGAGAAGTACGATGAGTGTATGAAAAAGGGCCTACCACTAAGTCATCATTCAGGGCTACTCAGCAGAAATGTAATTATTCAACGCCTAAAAGGCTGTGTGTCCGAGAGCTCTTCCATAACTGTACATGCTTGA 1122 0.4456 MAGSCFLGLRLRRSKSKPLPEPSSASKTHLEIDVDNMGRKRFDSMESWSMILDSMETWEASKEEEQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQIAVAVKMVRIPSEDEERKALLEMQFNSEVALLSRLFHHNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSMETILRLALDISRGMEYLHSQGVIHRDLKSSNLLLNDDMRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCEPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECMKKGLPLSHHSGLLSRNVIIQRLKGCVSESSSITVHA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02032 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cca08g02032 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02032 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cca08g02032 373 CDD STKc_MAP3K-like 83 327 - -
Cca08g02032 373 Gene3D Transferase(Phosphotransferase) domain 1 159 350 - -
Cca08g02032 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02032 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
Cca08g02032 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
Cca08g02032 373 SUPERFAMILY Protein kinase-like (PK-like) 50 330 IPR011009 -
Cca08g02032 373 Pfam Protein tyrosine and serine/threonine kinase 78 329 IPR001245 GO:0004672|GO:0006468
Cca08g02032 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cca08g02032 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cca08g02032 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cca08g02032 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cca08g02032 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02032 Cca-Chr8 53213605 53219957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02032 1 364 MAP Kinase Kinase Kinase AT1G62400 79.255 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca08g02032 PK_Tyr_Ser-Thr 8.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02032 - - aprc:113845847 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02957 11 56861746 56866553 Cca08g02032 08 53213605 53219957 PCT