Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02019 ATGACGCAGAAGCAGTTCTTCGTTCGGCCGCTGCCGGCGGGGCGCAGCATGGTCATGACCGGTTACCCGGAGGAGACGGTGGGATCGGTTCTGTATAGAATCGAGTACGCCACGCGAGTTCCAATGGCCGAACAGAGACTCATATATAAAGGAAAACAGCTTCAGTTGGACAAGACTCTGGAAGAATGCGGAATCGAGAACGATTCCAACCTTCACCTCGTTGCTTACTTGCGGAGTGGGGGCCACCCCGCCGCCTCGCGGATTATTGACTACATGGTTGCGGTGCTCTCGCACGTTCGACGCGGCGACACCGTGCGTTACGACTTGAGGATAATCAAGGTGCTGGTCTCGCGCCACTTCCTCGTCCCTGGTTTCGCTGAGCTTTTCATGGATTCGAAGGCTCCCATGCTGCTGGCCTCACTGTACACGTCGCCTCCCACAGGTGGCGACAGGGACTACGCCGGGTATTGCATAAGCTATATCATGAATTGCTGCAGGGCCAAAAATTTGCAGGGTGTTTCAGTTGCGGCGGCCGCATTGGAGTTTTGCAAGCAGCTTAAGAAGTTTGGGTGTGGGTGTGAGGATAATATGTACTCCTCGTGTCGAAGCACTTTGGGGTTTTTGTTGCAGGGGACTGGGAATGGGAGTGCTAAACGGACGGTTTCTTTTGGTGATGTTGCTTCTTTTGTTCCTGAGCTTGTGGATAGGTTGATTTTGGGGTTGAATTGGAGTATGAAGTGTCCCACCACCCTTACTAAGCCCTTGGTGGTGGAGATTGTGGATTTTGGAGTATTTGTGGCCACTGTGAGGAGAAGAGTTATGGTGGACCAGGGGTTGGAAGAGGTTTTGAGTGATGAGATTGAAAAATGTAATGCAGGGGAGATGCATGAGGTGAAGGGACAATTGTTTGAGGAACATGTTGATTTTCTTCGCATTGCTTTTGTGAGGTTGTTGAGCAAGATGAGTGAGTGTTTTCATGTCATGGCCCAACGCTTGGCTGACAAGGAGCATGAGAGGAGCAATGTTGTTGGCAATATAGCATGGGGTAAGTATCTTCGTATCTTGAAGGAGTTGTATGAGATTTCCAAGGTCTTTCATGATGCGGAGGAACAGTTTTGGAGAATTTTGATGTATCATAGGAATATGTTGTCTGCACTGATTGTTGGGTTTGTGAATAGAGGTTTTGATCATCAGTGGATTCTTGCCAACAAAAACGTGACTAATTTTGAGTGTAGGAGGCATTTGGCAATGCTGCAGTTCCCTTGCGCAGAAGAAGATTATGAGCTGTTTCAGGAAATGCTTATTGACAGGTCTAAGCTACTGGCTGAGTCCTTCGAGTACATTGGACGAGCTGAGCCCGAAACTCTGCGTTCTGGTCTGTTTATGGAATTCAAAAATGAGCAAGCTACAGGACCGGGTGTGACGCGGGAGTGGTTTGTTTTGGTGTGTCATGAAATATTTAATCCACAGAATGCTCTTTTTGTGGCTTGCCCGAATGACTGCAGGAGATTTTATCCAAATCCTGCATCTAAGGTACATCCTCGCCATCTTGAGTACTTCAGGTTCGCTGGACGTATCATTGCATTGGCATTGATGAAAAAGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTTATGCAATTGGCTGGAAACAATGTTATTTTAGAAGATATACGGGATGCAGATCCTTTCTTGTATAGAAGCTGCAAGCTAATATTGGAGATGCATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGTATTAGGATGCAGGAAAGTGGTTGAGCTTTGCCCTGATGGGAAAAGCCTTGTAGTGAATAGCAAGAACAGGGAGAAGTATGTTGATCTTCTTATAAAGAATTGTTTTGTGACATCCATATCTGATCAGGTATCACATTTTGCCAAGGGTTTTGCTGATATTCTTTCCAATTCAAAGCTGGAACAGTTCTTCCAATGGTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATACCATATCGGTTGATGATTGGAAGGCACATACCAAATACAAGGGCTATAAAGAGACTGATCATCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAAAGCAAAGGAAGGACCTTCTTTTCTTTTGGACATCTGTGAGATATCTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCATCTATCCATTTGCAGGTCTGTGCAACCTGACAATCACCTGCCCACATCTCACACATGCTTTTTCGAGTTGTGTTTCCCCCGGTACTCATCTATGGCTGTCATGCAAGATCGCCTTGAAGTCATAACTCAAGAACACATTGGTTTGAGTTTTGGTACTGGTTAA 2376 0.4592 MTQKQFFVRPLPAGRSMVMTGYPEETVGSVLYRIEYATRVPMAEQRLIYKGKQLQLDKTLEECGIENDSNLHLVAYLRSGGHPAASRIIDYMVAVLSHVRRGDTVRYDLRIIKVLVSRHFLVPGFAELFMDSKAPMLLASLYTSPPTGGDRDYAGYCISYIMNCCRAKNLQGVSVAAAALEFCKQLKKFGCGCEDNMYSSCRSTLGFLLQGTGNGSAKRTVSFGDVASFVPELVDRLILGLNWSMKCPTTLTKPLVVEIVDFGVFVATVRRRVMVDQGLEEVLSDEIEKCNAGEMHEVKGQLFEEHVDFLRIAFVRLLSKMSECFHVMAQRLADKEHERSNVVGNIAWGKYLRILKELYEISKVFHDAEEQFWRILMYHRNMLSALIVGFVNRGFDHQWILANKNVTNFECRRHLAMLQFPCAEEDYELFQEMLIDRSKLLAESFEYIGRAEPETLRSGLFMEFKNEQATGPGVTREWFVLVCHEIFNPQNALFVACPNDCRRFYPNPASKVHPRHLEYFRFAGRIIALALMKKVQVGIVFDRVFFMQLAGNNVILEDIRDADPFLYRSCKLILEMHADFIDSDALGLTFVREVEVLGCRKVVELCPDGKSLVVNSKNREKYVDLLIKNCFVTSISDQVSHFAKGFADILSNSKLEQFFQWLELEDLDWMLHGSENTISVDDWKAHTKYKGYKETDHQISWFWEIVGRMSAKQRKDLLFFWTSVRYLPVEGFRGLASHLSICRSVQPDNHLPTSHTCFFELCFPRYSSMAVMQDRLEVITQEHIGLSFGTG 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02019 791 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 3 789 - -
Cca08g02019 791 Pfam HECT-domain (ubiquitin-transferase) 481 783 IPR000569 GO:0004842
Cca08g02019 791 ProSiteProfiles HECT domain profile. 452 791 IPR000569 GO:0004842
Cca08g02019 791 SUPERFAMILY Ubiquitin-like 14 83 IPR029071 -
Cca08g02019 791 PRINTS Ubiquitin signature 15 35 IPR019956 -
Cca08g02019 791 PRINTS Ubiquitin signature 36 56 IPR019956 -
Cca08g02019 791 PRINTS Ubiquitin signature 57 78 IPR019956 -
Cca08g02019 791 Gene3D Hect, E3 ligase catalytic domain 674 789 - -
Cca08g02019 791 SMART ubq_7 4 76 IPR000626 GO:0005515
Cca08g02019 791 Gene3D - 2 90 - -
Cca08g02019 791 Pfam Ubiquitin family 14 75 IPR000626 GO:0005515
Cca08g02019 791 Gene3D Hect, E3 ligase catalytic domain 552 634 - -
Cca08g02019 791 SUPERFAMILY Hect, E3 ligase catalytic domain 429 776 IPR035983 GO:0004842
Cca08g02019 791 ProSiteProfiles Ubiquitin domain profile. 4 80 IPR000626 GO:0005515
Cca08g02019 791 SMART hect_3 450 789 IPR000569 GO:0004842
Cca08g02019 791 CDD HECTc 431 789 IPR000569 GO:0004842
Cca08g02019 791 Gene3D Hect, E3 ligase catalytic domains 434 666 - -
Cca08g02019 791 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 3 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02019 Cca-Chr8 53052315 53057382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02019 5 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.842 4.59e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02019 - - gmx:100789233 877.085