Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02011 ATGGTTTCGCTGGAGGAATCTCGCTCCAATTCGAGCCGTTTTCCCTTGCCGAGGGCTTATCAGTATCACTCTTCGGTTTCCTCCAAATCGCAGCGTCACATCGGAAGGTCCATGCGCACAATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCACCTGCTCCTTCACCGAGAAATCCACGTGTCTGTCGGAGAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCATCGCGTAACACTAAATCGGGGAAATCCTCGCCGGCGGAGGAGGACCTCCTCGACCTCTCGCAGGCCTTCAGCGACTTCTCCGCTTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCCACGCTTCCGTCGCCGCAGAAGAGCGACGCCGGCGGCGAGGAGGCGCCGGAGCTGGAGCCCGAGCCCTGCATGGGGTTCCTGCAGAGGGAGAGCTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCGCAGTCGGTGGCGGTGAAGCGCTCGGCGGCGGCGAAGCTGAGGCTGCTGGCGAAGAACCGCGCCGACAACCGCGTCCTGATCGCGGAGTCCGGCGCGGTGCCGGTCCTCGACAACAAGATGCTGATAACCAATGCCGGAGCGGTGAAGTCTCTCATTTATGTGCTGAAAACAGGAACGGAAACTTCGAAACAGAACGCGGCGTGCGCGCTTCTGAGTCTGGCGCTGGTGGAAGAGAACAAGAGCTCGATCGGCGCGTCGGGGGCGATTCCGCCGCTGGTTTCGCTGCTTCTGAACGGTTCGAACAGAGGGAAGAAGGACGCGCTGACAACTCTTTATAAGCTGTGTTCGGTGAAGCAGAACAAGGAGAGGGCGGTGAGTGCCGGCGCGGTGAAGCCGCTGGTGGATCTGGTGGCGGAGCAGGGGAGCGGCATGGCGGAGAAGGCCATGGTGGTGCTGAACAGCTTGGCGGGGATTCAGGAAGGGAAGGAGGCGATTGTGGAAGAAGGTGGAATTGCGGCTCTTGTGGAGGCTATTGAAGATGGGTCTGTGAAGGGGAAGGAGTTTGCGGTTTTGACCCTTCTTCAGCTCTGTTCTGACAGTGTCTCAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGACGGGAAGTGTTCGAGCTAAGCACAAGGCTGAAACGCTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCATCTACTTCGAGTTCTTAG 1290 0.5868 MVSLEESRSNSSRFPLPRAYQYHSSVSSKSQRHIGRSMRTIRSNFFQDDNSSTCSFTEKSTCLSENLTDSVVDLRLGELASRNTKSGKSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPQKSDAGGEEAPELEPEPCMGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVDLVAEQGSGMAEKAMVVLNSLAGIQEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCSDSVSNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02011 429 PANTHER U BOX DOMAIN-CONTAINING 6 215 - -
Cca08g02011 429 Pfam Armadillo/beta-catenin-like repeat 257 295 IPR000225 GO:0005515
Cca08g02011 429 Gene3D - 154 428 IPR011989 -
Cca08g02011 429 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 307 349 IPR000225 GO:0005515
Cca08g02011 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 217 426 - -
Cca08g02011 429 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 308 IPR000225 GO:0005515
Cca08g02011 429 SUPERFAMILY ARM repeat 167 418 IPR016024 -
Cca08g02011 429 PANTHER U BOX DOMAIN-CONTAINING 217 426 - -
Cca08g02011 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 215 - -
Cca08g02011 429 SMART arm_5 255 295 IPR000225 GO:0005515
Cca08g02011 429 SMART arm_5 379 419 IPR000225 GO:0005515
Cca08g02011 429 SMART arm_5 296 336 IPR000225 GO:0005515
Cca08g02011 429 SMART arm_5 337 377 IPR000225 GO:0005515
Cca08g02011 429 SMART arm_5 213 254 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02011 110 422 U-box Gene Family AT2G23140 40.857 6.39e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02011 - - ccaj:109803826 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02976 11 57008550 57009436 Cca08g02011 08 52932546 52934975 PCT