Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02010 ATGGAAATGGACCCTGGCAAGCTTTTCATTGGCGGGATTTCATGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTAGTTGAAGCTGTGATCATGAAGGATCGCATCACGGGGCGTGCCCGTGGATTCGGATTTATTGTTTTTGCTGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAGAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAGAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAACAGAAGCAACAGCAGCAGTCATGGGTCACCTGGTCCGACTCCTACCCGCACAAAGAAAATATTTGTTGGAGGTCTGGCATCCACAGTTACTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACGATTACAGATGTTGTTGTGATGTATGATCATAACACTCAAAGGCCTAGAGGTTTTGGATTCATCACATACGATTCTGAGGAAGGAGTTGAGAAAGTGCTGCATAAAACTTTCCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGGGCCATTCCGAAGGAATTATCTCCAGGTCCAAGTAGAGGACAATTAGGTGGATATGTTTATGGTATAAGTAGAGTTAGTAACTTTCCTAATGGTTGCATTCAAGGATATAATCCAAACCTTGTTGGTGGGAATGGACTAAGAATAGACGGTAAGATGAGTCCCGTTACTGTTGGCCGTAGTGGATATCCTCTTTTGAGTCCTACTTATGCGACAGGACTCAACTTTGAGCCACAATTGAGCCAAAATGAAAGTGCAAACTTCACATCTAACTTTGTCTTAGGACGGGCATTGAACTCTTATAGTGCAAGTCCAAGCAGGTACAATAATGCCATAGGTTATGCTGGTTCAAGTGTTGGCAACAATTCAACCATAAGTTCTACAAATCAAAATTTGTGGGGGAATGGAAACCTTAATTATGCTACTAACCCTACAAGCTCTGATGCTTTTGTTGGTTATGGAGGTGAAAATTCAAGCATGGGTTCTTTTGGTAGTATTGGATCACTTTGGAGTTCCTCACTTGGTACTGATCAAGCTGGAACTATTGGCTCTGGATTTGGTAGGAGCAGTCTTAGTTATAGGTCTGGAGATATGATTTTAGGGTCAAAAACAGTAGGTTATGGAAAAGGCAGTGAAAGCATTGCTGCATCAGCTTCATCATTTGCTTTATCAAATGGCAGTTATGATGAAGCATACAAAGATTCTTATGAAACTGGACCATTTTATCAGGACCACACTTGGAGATCATCAGCTTCAGAACTAGAGGATTCTGACTCTCTTGGTTTTGGCCTTGAAAATGTTGTTTCAGATTTAATGAGCAAAAGCTCTGGTGACCACATTAGGGCTTACGCTGTTGCTGCTAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1437 0.4148 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRITGRARGFGFIVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSSHGSPGPTPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEGVEKVLHKTFHELNGKMVEVKRAIPKELSPGPSRGQLGGYVYGISRVSNFPNGCIQGYNPNLVGGNGLRIDGKMSPVTVGRSGYPLLSPTYATGLNFEPQLSQNESANFTSNFVLGRALNSYSASPSRYNNAIGYAGSSVGNNSTISSTNQNLWGNGNLNYATNPTSSDAFVGYGGENSSMGSFGSIGSLWSSSLGTDQAGTIGSGFGRSSLSYRSGDMILGSKTVGYGKGSESIAASASSFALSNGSYDEAYKDSYETGPFYQDHTWRSSASELEDSDSLGFGLENVVSDLMSKSSGDHIRAYAVAANRQSNRGIAA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02010 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cca08g02010 478 SMART rrm1_1 109 181 IPR000504 GO:0003723
Cca08g02010 478 MobiDBLite consensus disorder prediction 86 103 - -
Cca08g02010 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cca08g02010 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Cca08g02010 478 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Cca08g02010 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Cca08g02010 478 SUPERFAMILY RNA-binding domain, RBD 99 204 IPR035979 GO:0003676
Cca08g02010 478 MobiDBLite consensus disorder prediction 81 108 - -
Cca08g02010 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Cca08g02010 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Cca08g02010 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Cca08g02010 478 Gene3D - 105 191 IPR012677 -
Cca08g02010 478 Gene3D - 5 88 IPR012677 -
Cca08g02010 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cca08g02010 478 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02010 Cca-Chr8 52923058 52927809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02010 8 201 Eukaryotic Initiation Factors Gene Family AT2G36660 28.713 5.99e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02010 K14411 - tcc:18597296 601.668