Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02007 ATGCAAACGTCCCAGAAACACTCAACTTCAGCTGGTATCCATTTATACCACCAGCCTGTGCAAGACATTGATCCCTACACTCATTACCAAATATTACAAAGCAATTCATGCCATGAAATCCATGATAGCAGCAGCCAGGGAACCACAATTTCTTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCAATCAATGACCTCATAGGTTGTGATTCTCCTTCATATGCTAGCGAATCATCCAATTCCAATAGAAGGAGTCATTTTTCTCCACAGGCTTCTCATTCATACCACTCAGACCAGCATCAGTCTTCTGACAACACTTATGAATCACCAACAAGTGTGCACTCTAGTGCTGATGATAGCTACGAATTGAAGCACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGACTGATTCAGATATTGTTGACAGTTGTCACTGCTGCTACAAGGGTGGCCATCACGGAGCACCTCCAATGGCTAAATATGATTGGGATCAGATTGTGGAAATGATTCCAAAATTAGACTTGAAAGAAGTCCTAATTCGGTGTGCACAAGCTGTGTCTGATGATGATATTGAAACAGCAGTGGGATTTATGAATAATGTTTTGCCAAAGATGGTATCAGTTGTGGGTGATCCGAGCCAGAGGTTAGGTGCTTATATGTTGGAGGGTCTAAGAGCAAGGTTGGGGTCTTCAGGGAGCCACATCTACAAAGCATTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATTCTGTATCAGATTTGCCCATATTGGAAGTTTGCTTACATATCTGCAAATGTTGTCATTGGAGAAGCAATGCTAAATGAATCAAGAATTCACATAATTGACTTCCAAATTGCACAGGGAACTCAGTGGATGTTGCTTATTCAAGCTCTTGCATGTCGTCCTGGAGGACCACCTTTCATTCGTGTAACTGGGAAACGGCTCTCAGATTATGCCAAGTCATGTGGAGTTCCATTTGAGTTCCACAGTGCTGCAATGTCTGGATCTGAGGTTGAACTAGAAAACCTTGTGATTCAACCAGGGGAAGCTCTGGCTGTGAACTTCCCTTATATTTTGCACCACATGCCAGATGAGAGTGTGAGCACTGAGAACCATAGGGACAGGCTATTAAGATTGGTGAAGAGCTTGTCACCCAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCCTTTTTCCAAAGGTTTGTTGAGACCTTCAGTTATTACACTGCTATGTTTGAGTCAATAGATGTGGCCCTCCCCAGAGATGATAAGCAAAGGATCAGTGCAGAACAACATTGTGTTGCTCGTGACATTGTCAACATGATAGCTTGTGAGGGGGCTGAGAGGGTGGAAAGGCATGAACCCTGGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTTCCTCAGTCATGAGTGCAGTTAGAGATTGCTTCGCTGTGTCTCCTCAGTATTCATATTCGCAGTGGCAGGGAAATACATTACCATCAATGATTTGCTGA 1572 0.437 MQTSQKHSTSAGIHLYHQPVQDIDPYTHYQILQSNSCHEIHDSSSQGTTISFEPCKEQYFTLESSPAINDLIGCDSPSYASESSNSNRRSHFSPQASHSYHSDQHQSSDNTYESPTSVHSSADDSYELKHKLRELEISLLGTDSDIVDSCHCCYKGGHHGAPPMAKYDWDQIVEMIPKLDLKEVLIRCAQAVSDDDIETAVGFMNNVLPKMVSVVGDPSQRLGAYMLEGLRARLGSSGSHIYKALKCEQPASKDLMSYMHILYQICPYWKFAYISANVVIGEAMLNESRIHIIDFQIAQGTQWMLLIQALACRPGGPPFIRVTGKRLSDYAKSCGVPFEFHSAAMSGSEVELENLVIQPGEALAVNFPYILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETFSYYTAMFESIDVALPRDDKQRISAEQHCVARDIVNMIACEGAERVERHEPWGKWRSRFSMAGFAPCPLSSSVMSAVRDCFAVSPQYSYSQWQGNTLPSMIC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02007 523 ProSiteProfiles GRAS family profile. 172 523 IPR005202 -
Cca08g02007 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 501 IPR005202 -
Cca08g02007 523 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 501 - -
Cca08g02007 523 MobiDBLite consensus disorder prediction 78 121 - -
Cca08g02007 523 Pfam GRAS domain family 181 499 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02007 Cca-Chr8 52894489 52898652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02007 1 502 GRAS Transcription Factor Family AT4G17230 56.214 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca08g02007 GRAS 6.5e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02007 - - gmx:100819190 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02980 11 57035628 57037460 Cca08g02007 08 52894489 52898652 PCT