Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02001 ATGGGCCGTTCTCGTGGGAATTTTCACGCTGATGAGGACCCCCACCAGAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTTAGAATCTGGAGCTTCAGGCCAAGGAGCAGGTGATGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACAGGAAAAATCCGTATCAAGTGTGCAGTGTGCCCAGATTTTGACTTGTGTATAGAGTGCGTTTCTGTTGGAGCTGAGGTGCAACCTCATAAAAACAACCACCCATACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGAACCAAAAACAAAGAAACATGCATAGAACACTATACGAATGTATACTCAAACTCCCCATTTTTTCCCGTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTCCTTGCCATGGCCAAAGGGCAGGGTGAAGACAAGAAAGGATTTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTTCCTTTTCTCCATCTAGAGCCAAAGTTGAAGATTCCCATAAAGCTGGCTCCGCTAACCGTTTGAATTCAGAGTCTGATTCTGGCCCCTTGGGTAACACACATGGTGCAACTGGTGCTAACCAAAAGGCATCTAATGTGGGCCGGGGAAAAGGAGGAGTCATCAAAATGGAAGATTCTCAAATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCAGGCAATGAAGGCCCTTCTTTAGTAGAATTGAGTGGTTATAATGCCAAAAGACAGGAATTTGATCCTGAATATGATCATGATGCTGAACAACTACTGGCTGAAATGGAATTTAAGGACACTGACACTGATGATGAGCGAGAGCTGAAACTACGTGTGTTGCATTACTTTTCAAAAAGGCTCGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTATTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGACAGTATGTCGGAAATATGACTTATTCATGCGCTTTCATTCTAAAGAGGAGCATGAGGAACTGATTAGAATAGTTATCTCTGAACATAGAACTCGTAAAAGGCTTCAAGAGCTTAAGCAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAAATATCTGTTACATAAGAGAAAAAGGGAAGCTGAAGAAAGTGCTCGTAGGACAAAAGAAAGTCCTCAGGTTGGCCCAAGCAATCAGGGGGTTCCAAATGCATTAATGTCTCCGGACTCTGCTGGCAAGGATTTGAGTGCAAGACCTGCAGGACCTGCTACTTCTAGTTCTGTCAACGAAATGGATGTCACGGGATACTATGGCGCAGATTTACTTTCTGAACCGGAGAAACGTTTATGTTGTGAGCTAAGGTTGCCTCCAGCCATATATCTAAAGATGCAAGAGCAACTGTCTCTACAAATACTTGCTGGCACTGTCTCTGCAAAATCAGACGCCCATCAGTTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGAATTGGTTCACCCTGA 1656 0.4293 MGRSRGNFHADEDPHQRSRRKKNAASGENLESGASGQGAGDGKKALYHCNYCNKDITGKIRIKCAVCPDFDLCIECVSVGAEVQPHKNNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKETCIEHYTNVYSNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGFSMGDLSLKAESSFSPSRAKVEDSHKAGSANRLNSESDSGPLGNTHGATGANQKASNVGRGKGGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDHDAEQLLAEMEFKDTDTDDERELKLRVLHYFSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTVCRKYDLFMRFHSKEEHEELIRIVISEHRTRKRLQELKQARAAGCRNSAEADKYLLHKRKREAEESARRTKESPQVGPSNQGVPNALMSPDSAGKDLSARPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPAIYLKMQEQLSLQILAGTVSAKSDAHQLFKMDAMKIDRVYDMLIKKGIGSP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02001 551 SUPERFAMILY Homeodomain-like 460 548 IPR009057 -
Cca08g02001 551 SUPERFAMILY RING/U-box 47 109 - -
Cca08g02001 551 Gene3D - 40 95 IPR043145 -
Cca08g02001 551 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Cca08g02001 551 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Cca08g02001 551 MobiDBLite consensus disorder prediction 215 241 - -
Cca08g02001 551 MobiDBLite consensus disorder prediction 1 41 - -
Cca08g02001 551 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Cca08g02001 551 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g02001 551 ProSiteProfiles SWIRM domain profile. 465 551 IPR007526 GO:0005515
Cca08g02001 551 CDD ZZ_ADA2 47 95 IPR041983 -
Cca08g02001 551 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Cca08g02001 551 CDD SANT 107 149 IPR001005 -
Cca08g02001 551 PIRSF Txn_adaptor_ADA2 34 551 IPR016827 GO:0003713|GO:0006357|GO:0035065
Cca08g02001 551 Pfam Zinc finger, ZZ type 45 84 IPR000433 GO:0008270
Cca08g02001 551 SMART sant 103 152 IPR001005 -
Cca08g02001 551 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 550 IPR034318 GO:0003713|GO:0006357|GO:0035065
Cca08g02001 551 MobiDBLite consensus disorder prediction 197 278 - -
Cca08g02001 551 SMART zz_5 43 87 IPR000433 GO:0008270
Cca08g02001 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Cca08g02001 551 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Cca08g02001 551 MobiDBLite consensus disorder prediction 433 448 - -
Cca08g02001 551 MobiDBLite consensus disorder prediction 422 472 - -
Cca08g02001 551 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 550 - -
Cca08g02001 551 Pfam Myb-like DNA-binding domain 106 148 IPR001005 -
Cca08g02001 551 Gene3D - 101 151 - -
Cca08g02001 551 Gene3D - 466 549 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02001 Cca-Chr8 52806751 52814453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02001 1 549 EF-hand Containing Proteins AT3G07740 47.222 9.57e-160 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g02001 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02001 K11314 - gmx:100811887 1009.98