Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02000 ATGTCGGGTGGAGTTTTCGTGGCGTGGGAGGAGCGGGTGATTTGCCAGGAGCGTGGGAACCGAGTGATTCATTTCTATCTGAAGGATGCGTTGGGGAAATCGGTGCTGGCGGTGGTGGGGACTGAGCGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCTTATGGATCCACGCAGCCCATTAATGCTTGCAAGTGGAGGGCGCGGAGGGAGGTCGTTGATTGGCTCACTTGCCTCGTCTCTCACAATCGCCAACACCATGCAGGTGTACAGCTGGATGATTCGGCACAAGCCGAAGAATCTCTTAAGATTTTAACACCTGGAGTCAATGTCAATAATAAGATTATACCTGATAAAATGATTTCTAGAAAACTGAAATTTCAAAGCTCAGATATTGAATGGTCAGGCTTGGCTTGGCTTTGTGCTAAACAGCTGAAGCACTACTCAGGGTTTTGCAGGAATGGAACAACCATAAGTGTTCATTCATTTGTATATATCATGGCTGAAGAAGAAAACCACTATCTTGGTTACTTGGAAGATATGTATGAAGACAAGAAGAGACAAAAAAAAGTGAAAGTACGGTGGTTTCACCATGGTCAGGAAGTTAAACATGTGATTCCACAGCTGACTCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCAACAGTGTTGACTCCTAAGCATTATGATAAATACCTGGCTGCTGTGCCTCATACCTCTTTATCTGAGATCCATACATGCTTTAGGCAGTTTAAAAACAATAAGCTTAAGCCCTTCGCACTTACAAAGTTGCGTGGATATAGTAACCAATCTATACTTTCTTGTTTGAATAGTCCTATTTTCTCCAAGAGAAAGGCAAAGTGTGAAAAGTCACACACAGATGATGATGAGAACCTTACTCAAGATGATCCTTTAAGGTCCAGCAATAAGAGGAATAGAAGTTCTAAGGATCAAATGCTCGAAAAGGGTTTATCTGGTCTGCAAATCTCTGATCCTACAAATGAAATGACAAAATGCGAACCAAAATACCCTAGTTTAAGATTAAAACTATCAAGGAAAACAATGGGTATTAAGGTTATTGGACCAAAACCTCAACTGTCTTTCCAAGTTGGTGAAAAGATAGAGTTTCTCTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGTATGTCTCCGAAGCAGCTGAAGGTCCAATATGAGGATTTGCTGGATGTAGATGGACCAGAGAAACTAGAGGAATGGATCCCTGCATCTAGAGTGGCAGCTCCTGACAAGTTGGGTATCCGATGTCCAGGCCGCTTAACAGTACGGCCATGCCCTCCTGAATATACTACAAGTCATACTTTTGAGATTGGAGTGCCGGTGGATGCCTGGTGGTGTGATGGATGGTGGGAAGGTGTCATAACTGCAGTTAATGTTAGCGAAGATGGAATCCTGCAGGTTTTTAGCCCTGGTGAAGAGAGATTCCTAATGGTCGACAAGAAGAACATTCGGGTTTCCCGAGATTGGATCAGTAACAGGTGGGTTGATATACAGGGAAAGCCTGACATTTGCAGCTATTTGTCTTCAAACGTCAGGTGCAGTGTTCGGATGTCAGCTAATTCTGCAGTGGTAGGTGGATCTAAGTCTGATTGCTCTGCAATAGTAGTAAATAAACCATCATCGATTGTCAAAGTTGAAGTTGCTAGGGTTGAGCCAGATTTATCTGGTTTGGAGGCACCTACTTACCTGGAAAGCATGAAGGGGGCTTTGAGGAAGCCACTCTATGCCATTCacgaagacaaggatgacaactctggtagtggctgtgatgatgaagctgacaaggctgtgaagactcttctggcctttaatgaaaacaagaataataactctggtgatgacaatgatgctgacactgacaatgacgacgatgttgatgaaaatgatgataatgatgctgacaatgatgatgaggacagtgaggaaaattttgatggttCTGAACCAAAACTTGATGCAGCAGAAGTAATACGAGCTGCATGA 2094 0.3949 MSGGVFVAWEERVICQERGNRVIHFYLKDALGKSVLAVVGTERSVRHMMYVVPDHFLQAYGSTQPINACKWRARREVVDWLTCLVSHNRQHHAGVQLDDSAQAEESLKILTPGVNVNNKIIPDKMISRKLKFQSSDIEWSGLAWLCAKQLKHYSGFCRNGTTISVHSFVYIMAEEENHYLGYLEDMYEDKKRQKKVKVRWFHHGQEVKHVIPQLTLQEGEVFITPHVQVISAECVNGPATVLTPKHYDKYLAAVPHTSLSEIHTCFRQFKNNKLKPFALTKLRGYSNQSILSCLNSPIFSKRKAKCEKSHTDDDENLTQDDPLRSSNKRNRSSKDQMLEKGLSGLQISDPTNEMTKCEPKYPSLRLKLSRKTMGIKVIGPKPQLSFQVGEKIEFLCQDSGIRGCWFRCKILSMSPKQLKVQYEDLLDVDGPEKLEEWIPASRVAAPDKLGIRCPGRLTVRPCPPEYTTSHTFEIGVPVDAWWCDGWWEGVITAVNVSEDGILQVFSPGEERFLMVDKKNIRVSRDWISNRWVDIQGKPDICSYLSSNVRCSVRMSANSAVVGGSKSDCSAIVVNKPSSIVKVEVARVEPDLSGLEAPTYLESMKGALRKPLYAIHEDKDDNSGSGCDDEADKAVKTLLAFNENKNNNSGDDNDADTDNDDDVDENDDNDADNDDEDSEENFDGSEPKLDAAEVIRAA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02000 697 MobiDBLite consensus disorder prediction 309 336 - -
Cca08g02000 697 MobiDBLite consensus disorder prediction 652 682 - -
Cca08g02000 697 SMART agenet_At_2 470 528 IPR014002 -
Cca08g02000 697 SMART agenet_At_2 384 449 IPR014002 -
Cca08g02000 697 ProSiteProfiles BAH domain profile. 161 280 IPR001025 GO:0003682
Cca08g02000 697 MobiDBLite consensus disorder prediction 309 358 - -
Cca08g02000 697 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 4 587 - -
Cca08g02000 697 SMART BAH_4 161 280 IPR001025 GO:0003682
Cca08g02000 697 Pfam BAH domain 162 249 IPR001025 GO:0003682
Cca08g02000 697 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 587 - -
Cca08g02000 697 Pfam Agenet domain 389 464 IPR008395 -
Cca08g02000 697 MobiDBLite consensus disorder prediction 641 697 - -
Cca08g02000 697 Gene3D - 128 276 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02000 Cca-Chr8 52797219 52804448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02000 398 526 PHD Transcription Factor Family AT5G58610 27.612 3.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02000 - - gmx:100816046 1147.11