Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01997 ATGACGTCCATACCTTCGAAAAACCTATGTATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATGCTGAGGAGGGTTCTGCAGCACCGGAATTGGTGAAGGCAGAGAAAGCATCTTCTGGAGCTATGATTACTCCCTATGTTGGGATGGTGTTTAAGAGTGATGATGAGGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTTTCAATTAGGAAAGAAAGATCTAGAATTAGCCCTCAGTTGGGGATTTACAAGCGTGATTTCGTTTGTTACCGGTCCGGTTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTATCTGTCCAAGGAGGTTGTAGAAGGTGTTTCCCAGTGGTTTATTGTGCAGTTCAGCAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGCCTTTTGCCGGCATATCGTAAGATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTTTCCAAGGCCGGGTTTCCGATACATCGGATAGTGAAAATGCTTGAGCTGGAGAAGGGGATTCAAGGGGGCCAACTTCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCAAGAGAACGAGGCATTGCTCAATGAGAAAAGAGAAAATGATGTGTTGGAACTTCTTGAGGCGTGCAAAGCCATGAAAGAAGCAGATAATGACTTTGTTTATGATTTTACTATGGATGCGAATGATAAGGTCGAAAATGTAGCATGGTCATATGGCGACTCGGTTAATGCAAATGCTATGTTTGGTGATGTGGTTTATTTTGACACTTCTCATCGATCTGTCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAGCTATGGCAGAACCATTTTTTTTGGTTGTGTTTTATTGCAGGATGAAACACACCAATCCTTCTCATGGGCGTTACAGACTTTTGTCCGGTTAATGAGAGGAAGATTTCCACAAACTATTCTAACTGATCTAGACCCGGGGCTTAGAGATGCCATTAGAAGTGAACTTCCAGGAACTAAACATGTCATTCCTCAGTGGAATTTTCTATACAAGGTACCCTGTTGGTTTTCTCCTCCTCTGGGTTCTCGGTATGCAGAATTTAAATCTGAGTTCGATGCCTTATTTCATATTGAGAGTACAGAGGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACACACTGATTTGTTGTATTCTGTTCGAGCATCCTGGGCACAAGTCTATGTAAGGGGTTACTTTCTGGCTCGAATGGAAACCATAGCTTACTCAAAGTCTATAGATGCATTTCTGAAAGGGATTTTTGCTACACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATCACTGCTAGTTTTCAACATCAAGCACACCAGGAGACTCAATATATTCATCTCAAAACCTGCATACCAATTGAAGAGCATGCACGGAGTATTCTCACACCTTTTGCCTTTAATGCCTTGCAGCAAGAGTTAATGCTGGCAATGCAATATGCTGCATCCGAAATGGCCAACGGATCATATATTGTCCGGCACTACAAAAGGATGAATGGAGAACGGCTCGTGATATGGTTGGCTGAAGATGATCAGTTACATTGCTCTTGCAAGGAATTTGAATCCTCAGGAATATTATGCAGGCATGCTCTTCGTGTACTTGTAATAAAGAATTACTTTCAGCTTCCTGATAAATACCTTTTAGGTAGATGGAGACGGGAATGCTCATTACTTGTTGATGATGATCATAATAACCAAGGTATTGGTGGGGAATGGTTTCAAGAATATCAGTCCCTGGCTGAAACTTTGTTTTCAGAATCTTCGATTACAAAGGAGCGGTCTGACTATGTTCGGAGAGAACTGACAAAAGAAGTTACTAGGATTCTTAATGAGGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACATGTCTGTTTCTCCAGCCAGCTAG 2076 0.4196 MTSIPSKNLCIRRQQCPCGDWKCYITYEGDAEEGSAAPELVKAEKASSGAMITPYVGMVFKSDDEAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFIVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLNEKRENDVLELLEACKAMKEADNDFVYDFTMDANDKVENVAWSYGDSVNANAMFGDVVYFDTSHRSVTYGLLFGVWFGIDSYGRTIFFGCVLLQDETHQSFSWALQTFVRLMRGRFPQTILTDLDPGLRDAIRSELPGTKHVIPQWNFLYKVPCWFSPPLGSRYAEFKSEFDALFHIESTEEFELQWSQMISVFGLGSDKHTDLLYSVRASWAQVYVRGYFLARMETIAYSKSIDAFLKGIFATHTCLRSFFEQVGITASFQHQAHQETQYIHLKTCIPIEEHARSILTPFAFNALQQELMLAMQYAASEMANGSYIVRHYKRMNGERLVIWLAEDDQLHCSCKEFESSGILCRHALRVLVIKNYFQLPDKYLLGRWRRECSLLVDDDHNNQGIGGEWFQEYQSLAETLFSESSITKERSDYVRRELTKEVTRILNEVRNLPEADGVCMNMSVSPAS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01997 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 680 IPR031052 GO:0006355
Cca08g01997 691 SMART 26again6 573 600 IPR006564 GO:0008270
Cca08g01997 691 Pfam SWIM zinc finger 572 594 IPR007527 GO:0008270
Cca08g01997 691 Pfam MULE transposase domain 291 382 IPR018289 -
Cca08g01997 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Cca08g01997 691 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 680 - -
Cca08g01997 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01997 Cca-Chr8 52758389 52761585 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g01997 MULE 6.8e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01997 - - gmx:100817107 1334.7