Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01988 ATGCATGCTCCAAGCCCTTCCTGGATGCAGACTACCTCGGGGTATGAGGATATGTACAGTGAACTAGCAATTCCAACGATGATTACTTGGAGTTATGATGGGAAGGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGACTTCACAATAATGAAGGTGCTGCCATCTGGTGTATACCAATTTAGATTTATTGTTGATGGACAGTGGAGGTACGCCCCTGATTTGCCTTGGACTCAAGATGATGCAGGGAATGCTTACAACATTTTGGACTTGCAGGATTTTGTTCCTGAAGACATTGAAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAGCTTAGTTCTGAAGATTATGCAAAGGAGCCACCATTAGTTCCTCCATATTTACAAATGACGCTTCTTAATGTTCCGTCAACAAATATGGACATCCAACCTCTTACATGCAGACCCCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTTGCGCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTGACTGTAGTGCTGTACAAGTCTTTGCAGAGGTAA 636 0.4277 MHAPSPSWMQTTSGYEDMYSELAIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQDFVPEDIESISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNVPSTNMDIQPLTCRPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01988 211 Gene3D - 112 209 - -
Cca08g01988 211 SUPERFAMILY AMPKBI-like 106 208 IPR037256 -
Cca08g01988 211 Pfam Glycogen recognition site of AMP-activated protein kinase 24 103 IPR032640 -
Cca08g01988 211 CDD E_set_AMPKbeta_like_N 25 101 - -
Cca08g01988 211 Gene3D Immunoglobulins 18 106 IPR013783 -
Cca08g01988 211 SMART AMPKBI_2 119 209 IPR006828 GO:0005515
Cca08g01988 211 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 137 207 IPR006828 GO:0005515
Cca08g01988 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 211 IPR043554 -
Cca08g01988 211 SUPERFAMILY E set domains 24 109 IPR014756 -
Cca08g01988 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01988 Cca-Chr8 52696084 52698271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01988 26 104 Protein tyrosine phosphatase (PTP) family AT3G01510 30.864 6.25e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01988 K07199 - gmx:100777497 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02997 11 57160389 57162969 Cca08g01988 08 52696084 52698271 PCT