Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01986 ATGATAGGCTTTGCGTTGTTGTGTCTTTATGAGGCCACAACTGGTCGCTACTTTGCATCATCCTTTTCTGATTCGAGAATGCTTTGTTTATGCTCATCTTTGgatgctgcggatgaagatgaggatgatgaCAATTCATCAGCAAGTAGTGAAGCACTCGGCTCTAGAAAGAGGAGGAGAAAGACAGAGCGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAAAAGCAAGAGCTGATGCACAGACAGTTAGTGGAAATGATAGAGAACAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAACACGAGGAGATGGAGAGAATCAGAAAAGATGAAGAAGCTAGAGCCCAAGAGAGGTCCCGCAATTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCATGAAATTCAGATCCCCCAACCAGTAGAAGAAGCATGCGGCAAAAGAGAAGAGGATGAAGTTGAGGTGAATGCACAAAAGGATTTGAATAATGACTCAAGTAACAACAGATGGCCTGATGTTGAAGTGCAATCACTGATCACTGTGAGAACTTCATTGGAGCACAAGGTTCGTCTAATGGGGTCCAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGCATGGCATGGGATACAATCGCTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAGTAGGGAGTGGCAAGAAAAGGCGTCTCAATAGTAAAACGATTTGCGGTGGTGGCAGTGTTTTTTTTTTTATGCGATTAGGGGTTAAGTTTGAACTTGTGCTTAGAATATGTTGCGGTGCGGACAATTGTTGTCCATCATGA 861 0.4146 MIGFALLCLYEATTGRYFASSFSDSRMLCLCSSLDAADEDEDDDNSSASSEALGSRKRRRKTERKLEGFVKNLVTKVMEKQELMHRQLVEMIENKERERIKREEAWKHEEMERIRKDEEARAQERSRNLALISFIQNLLGHEIQIPQPVEEACGKREEDEVEVNAQKDLNNDSSNNRWPDVEVQSLITVRTSLEHKVRLMGSKGSIWEEISEAMHGMGYNRSAKKCKEKWENINKYYKRTVGSGKKRRLNSKTICGGGSVFFFMRLGVKFELVLRICCGADNCCPS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01986 286 PANTHER - 31 253 - -
Cca08g01986 286 CDD GT1 176 240 - -
Cca08g01986 286 Pfam Myb/SANT-like DNA-binding domain 176 248 IPR044822 -
Cca08g01986 286 Coils Coil 78 98 - -
Cca08g01986 286 ProSiteProfiles Myb-like domain profile. 170 234 IPR001005 -
Cca08g01986 286 MobiDBLite consensus disorder prediction 37 59 - -
Cca08g01986 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 31 253 - -
Cca08g01986 286 Gene3D - 178 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01986 Cca-Chr8 52618234 52619694 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01986 57 273 Trihelix Transcription Factor Family AT5G47660 44.589 3.07e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g01986 Myb_DNA-bind_4 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01986 - - ccaj:109790864 413.69