Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01984 ATGGACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCTCCTCTTCGCCGCCGACCCCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCAGGTCCCTCCCCGCCACCAACCCTCCTCCTCCACCGCACGATCCGATTCCTTCCGGGTCGGGTCACGCCCCGCCTCACGAATCTCGCTCATCTTTGgatgctgcggatgaagatgaggatgatgaCAATTCATCAGCAAGTAGTGAAGCACTCGGCTCTAGAAAGAGGAGGAGAAAGACAGAGCGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAAAAGCAAGAGCTGATGCACAGACAGTTAGTGGAAATGATAGAGAACAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAACACGAGGAGATGGAGAGAATCAGAAAAGATGAAGAAGCTAGAGCCCAAGAGAGGTCCCGCAATTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCATGAAATTCAGATCCCCCAACCAGTAGAAGAAGCATGCGGCAAAAGAGAAGAGGATGAAGTTGAGGTGAATGCACAAAAGGATTTGAATAATGACTCAAGTAACAACAGATGGCCTGATGTTGAAGTGCAATCACTGATCACTGTGAGAACTTCATTGGAGCACAAGGTTCGTCTAATGGGGTCCAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGCATGGCATGGGATACAATCGCTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAGTAGGGAGTGGCAAGAAAAGGCGTCTCAATAGTAAAACTTGCCCTTACTTTGATGAGTTGGACACTCTGTATAGAAACGGGCCTCTAAGTATTGGAAACGCCTCAAGCAATACCAGTGATGTTCCCCAGATTGAAGAAAAGGAGTAG 990 0.4778 MDLFAADHFPVPDHVAPFPDSGDLLFAADPLSHRHNPQKLRPIRSLPATNPPPPPHDPIPSGSGHAPPHESRSSLDAADEDEDDDNSSASSEALGSRKRRRKTERKLEGFVKNLVTKVMEKQELMHRQLVEMIENKERERIKREEAWKHEEMERIRKDEEARAQERSRNLALISFIQNLLGHEIQIPQPVEEACGKREEDEVEVNAQKDLNNDSSNNRWPDVEVQSLITVRTSLEHKVRLMGSKGSIWEEISEAMHGMGYNRSAKKCKEKWENINKYYKRTVGSGKKRRLNSKTCPYFDELDTLYRNGPLSIGNASSNTSDVPQIEEKE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01984 329 CDD GT1 217 281 - -
Cca08g01984 329 MobiDBLite consensus disorder prediction 46 62 - -
Cca08g01984 329 MobiDBLite consensus disorder prediction 310 329 - -
Cca08g01984 329 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 70 326 - -
Cca08g01984 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Cca08g01984 329 MobiDBLite consensus disorder prediction 29 103 - -
Cca08g01984 329 Pfam Myb/SANT-like DNA-binding domain 217 304 IPR044822 -
Cca08g01984 329 Coils Coil 119 139 - -
Cca08g01984 329 Gene3D - 219 280 - -
Cca08g01984 329 PANTHER - 70 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01984 Cca-Chr8 52608501 52610596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01984 98 307 Trihelix Transcription Factor Family AT5G47660 46.429 1.94e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g01984 Myb_DNA-bind_4 9.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01984 - - pvu:PHAVU_006G139200g 527.709